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A Sourcebook for the Worldwide Discovery of a Creative Organic Universe
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. The Book of Naturome: Our WorldWise Discovery of a Phenomenal Ecosmome to Geonome Endowment

In accord with the Book of a Genesis UniVerse CoCreation past review, present geonate and preview outline above, this next version will continue Galileo’s second edification theme with his most familiar title (Chap. II. A. 3). Once again, this late occasion, some 400 years on, can be qualified by and attributed to a consummate evolutionary emergence of a planetary progeny. This Earthuman acumen just forming in our midst can then be realized as coming to her/his own phenomenal knowledge a novel geonomic literacy. As this collaborative sapiensphere takes on the semblance of a whole bicameral. womanwise faculty, such a capacity is able to allow and witness a greater genesis from uniVerse to EarthVerse.

By way of this rationale and attribution, which is noted throughout the site, a 21st century scientific, conceptual, ecosmic revolution (Ecopernican) also becomes evident. By 2020/2021, braced by some 8,800 references over 85 sections and 4,000 pages, if of a mind to ask, see and consider, a breadth and depth of evidential veracity suggests that it may be possible to actually discover what this ambient being and becoming may be and become. By virtue of its organic, procreative essence, an informative code-script program source has been found with an independent, eternal presence which then ascends along in an exemplary, genotype-like way at each and every instance.

In further regard, Chapters III and IV gather and report its multiplex universal, mathematic, self-organized spontaneity. Chapters V, VI, and VII next proceed over 40+ sections to document how it has experimentally proven to be in common self-similar, scale invariant evidence across every spatial and temporal phase and instance. This innate, natural (parental) hereditary quality thus imparts and expresses itself from galaxies to geologies to life’s nested, developmental, cellular, quickening, personified gestation. And just now, as yet unawares, this oriented procession arrives at our prodigious EarthKinder (son/daughter) potential issue.

As Earth evolution and history reaches this early 2020s hour, as Geonate above sited, a consummate moment of dire, multi-demic trauma and urgency has taken on an epic apocalyptic guise. Again this ancient Greek word was more about a concurrent, numinous dispensation by which a new creation, a beginning of days, is to be revealed and informed. We thus feel it is apt propose that Galileo’s Book of Nature written in mathematics and geometry, circa 1623, can at last be fulfilled as an EarthWise edition whose textual narrative is composed in genetic language. With this Natural Genesis site as a resource, our intent here is to gather an array of current papers which can attest and affirm for every phase and facet so as to certify such a Naturome basis. We first begin with a 21st century sequential survey of its broadly conceived scientific discernment as 1990, 2000, 2005, 2010, 2015, 2018, and 2020/2021 stages spiraled from individuals to a global collaborative success.

A 2021 Survey as Our Earthuman Sapience Discovers a Family Ecosmos Genesis with a Naturome Code

As a way to express this providence, we trace the scientific origins, development, and late consolidation of self-active complexity phenomena by way of a 1990 to 2022 sequential orientation. In retrospect, this thirty year span to date can be sorted into 1990, 2000, 2005, 2010, 2015, 2018 and 2020/2021 phases so as to convey a typical divergent, convergent and now integrative occasion. By this late vista, a spiral transition from individuals to its present global collaborative success can be viewed.

Apropos, we note the presentation yesterday (October 5) of the 2021 Nobel Physics prize to Giorgio Parisi, (Sapienza University, Rome) for his dynamic “spin glass” theories. While one worthy man, the award is for a certain aspect within a vast subject field. Into the 2020s it would seem more rightly to have a “Global Prize,” with a corrective expansion to include biological, genetic, cerebral, linguistic, societal and other fields. ONCE

1990 A subsequent major emergent evolutionary transition in individuality could be seen to begin with the end of the cold war standoff. I visited the Santa Fe Institute in 1987 where the complexity revolution was much initiated. Coincidentally an unprecedented era began whence worldwide communication, travel, and trade became increasingly possible. At the same while this epochal revision of complex, self-organizing, systems science takes of in depth and diversity. The parallel appearance of graphic computational abilities provided a vital component.

2000 Into this new century, and millennium (quite timely), personal laptop computers, faster mainframes, and Internet websites began to form an interlinked capacity. But Apple and Microsoft programs are rudimentary, Google, Amazon, et al are fledgling start-ups. The study of “nonlinear” dynamic phenomena in many guises such as complex adaptive systems, synergetics, automata, fractals, et al (see Chap. IV for an extensive survey) came to inform theoretical and experimental endeavors.

2005 Early stages of scientific publisher and academic library websites were just coming online. I still had to go to MIT to fetch paper books such as The Knowledge Grid (Hai Zhuge) and to Yale for Self-Organization and Evolution of Social and Biological Systems (Hemelrijk), This later collection was the first time that wherein entries from molecular and microbial domains to animal groups to languages began to report something similar going on at each instantiation.

2010 After a decade of interlinked hardware and software advances, along with more user access, scientific journals shifted to a paperless online presence. (My own view is that both human-scale paper and faster cyberspace modes should have been kept, especially so students. A worldwise sapiensphere began to form and intensify into billions of site content-filled sites such as encyclopedias. As this global facility stirred into a relative mind of her/his own (Daniel Graham 2021, et alia), by an evident consideration, it might be seen as commencing to learn on its (her/his) prodigious own. At this date, the presence of nature’s multiplex networks from neural to metabolic and celestial realms gained recognition.

2015 A phenomenal Ecopernican revolution enters a convergent phase of integrative synthesis. As quantum and classical systems united, astronomic raiments gained an active fertility, and life’s physiological, cellular and cognitive scales organized themselves, an independent code-script became well implied. A common informative, bigender-like source which served to form emergent vitalities could be readily distilled. Life’s symbiotic unions, and biosemiotic encodings also were also as a prime movers. In tandem, a historic advance in artificial intelligence (AI) occurred whereof brain-like neural nets were found to be a much better method.

2018 A further quality could now be appreciated whence these natural patterns and processes were realized to seek and reside at a self-organized critical balance of entity and community modes. At an accelerating pace, a strong recognition that an ecosmic universal genesis performs best at a dynamic bigender poise of neuron + synapse, me member + we group, DNA biomolecule + AND regulatory net, and ever on, became widely articulated (Chap. IV. B. 4).

2020/2021 As this EarthMinder intelligence may reach an epic momemt of observant self-cognizance, our planetary progeny is now well informed and prepped to actually discover a natural genesis uniVerse to human/Wuman EarthVerse procreation. In accord, such a fertile organic spontaneity seems to be rooted in and spring from one, genetic-like (familial) program. A once and future UniVersality For a working word, a “Naturome” source code is dubbed as a once and future “Universality” by virtue of its whole scale recurrence. Search “Alexandria” for a December 2019 conference by this name, sponsored by the NSF director France Cordoba.

But in March, a fierce global pandemic overtook all lands and peoples and devastated our vital Gaian abode and precious kinderkind, If there were not enough troubles, a compound onslaught of climatic, military, political, sectarian and more calamities led to an “apocalyptic” dread (see Geonativity in Part I.). Into this 2021, when it seemed that vaccines could turn the tide, the virus morphed into a worse variant. But this ancient Greek word was more about a palliative dispensation which can would then reveal and inform a new peaceable transformation and resolve. See VIII. Pedia Sapiens for some geonomic guidance, mind/matter, second genesis, protocell ecovillage and complementary genocracy examples.

To restate, the intent of this Part A: The Book of Naturome entry is to identify and make available at this traumatic hour that a second scriptome editiom may indeed also be there for our providential edification. If an emergent transition to a planetary progeny can allowed and considered, this global sapience seems altogether proceed to have discovered a family ecosmic procreation, as this whole site documents. In regard, a select list of entries for each topical section that just now (2019 – 2021) can serve to affirm an ecosmomic to geonomic code follows next.

The full current reference list for each chapter and verse herein was first posted in July 2021. As contributions which fill in and verify a common bigender, part/wave. DNA/AND bigender universality appear apace, we add an array of select entries for September and November 2021.

November 2021 Choice Citations
Aerts, Diederik and Lester Beltran. Are Words the Quanta of Human Language? Extending the Domain of Quantum Cognition. arXiv:2110.04913.
Danger, Gregoire, et al. On the Conditions for Mimicking Natural Selection in Chemical Systems. Nature Reviews Chemistry. 4/102, 2020.
Kuppers, Bernd-Olaf. The Language of Living Matter: How Molecules Acquire Meaning. International: Springer Frontiers, 2021.
McGuire, Brett. 2021 Census of Interstellar, Circumstellar, Extragalactic Protoplanetary Disk, and Exoplanetary Molecules. arXiv:2109.13848.
Mediano, Pedro, et al. Greater than the Parts: A Review of the Information Decomposition Approach to Causal Emergence. arXiv:2111.06518.
Mondal, Shrabani, et al. Universal Dynamic Scaling in Chemical Reactions At and Away from Equilibrium. arXiv:2101.01613.

Semple, Stuart, et al. Linguistic Laws in Biology. Trends in Ecology and Evolution. October 2021.
Sinhuber, Michael, et al. An Equation of State for Insect Swarms. Nature Scientific Reports. 11/3773, 2021.
Tosches, Maria. From Cell Types to an Integrated Understanding of Brain Evolution: The Case of the Cerebral Cortex. Annual Review of Cell and Developmental Biology. Vol. 37, October, 2021.
Unterberger, Jeremie and Philippe Nghe. Stoechiometric and Dynamical Autocatalysis for Diluted Chemical Reaction Networks. arXiv:2109.01130.
Valani, Rahil and David Paganin. Deterministic Active Matter Generated Using Strange Attractors. arXiv:2110.03776.
Voutsa, Venetia, et al. Two Classes of Functional Connectivity in Dynamical Processes in Networks. Journal of the Royal Society Interface. October 2021.
Zelnik, Yuval, et al. High-Integrity Human Intervention in Ecosystems: Tracking Self-Organization Modes. PLoS Computational Biology. September 2021.

September 2021 Especial References:
Bohdalkova, Eliska, et al. Universality in Biodiversity Patterns: Variation in Species Temperature and Species-Productivity Relationships. Ecography: A Journal of Space and Time in Ecology. 44/9, 202i.
Choi, Jeong-Mo, et al. Physical Principles Underlying the Complex Biology of Intracellular Phase Transitions. Annual Review of Biophysics. 49/107, 2020.
Deacon, Terrence. How Molecules Became Signs. Biosemiotics. October 2021.
Graham, Daniel. An Internet in Your Head: A New Paradigm for How the Brain Works. New York: Columbia University Press, 2021.
Guimaraes, Paulo. The Structure of Ecological Networks across Levels of Organization. Annual Review of Ecology, Evolution and Systematics. 51/433, 2020.
Heffern, Elleard, et al. Phase Transitions in Biology: From Bird Flocks to Population Dynamics. Proceedings of the Royal Society B. October 2021.
Katsnelson, Mikhail, et al. Self-Organized Criticality in Neural Networks. arXiv:2107.03402.

Kun, Adam. The Major Evolutionary Transitions and Codes of Life. Biosystems. September, 2021.
Notarmuzi, Daniele et al. Universality, Criticality and Complexity of Information Propagation in Social Media. arXiv:2109.00116.
O'Reilly, Randall, et al. The Structure of Systematicity in the Brain. arXiv.2108.03387.
Roy, Anjan, et al.. A Unifying Autocatalytic Network-based Framework for Bacterial Growth Laws. Proceedings of the National Academy of Sciences. 118/33, 2021.
Renken, Elena. Turing Patterns Turn Up in a Tiny Crystal. Quanta. August 10,, 2021
Ribeiro, Tiago, et al. Scale-Free Dynamics in Animal Groups and Brain Networks. Frontiers in Systems Neuroscience. January 2021.
Sarfati, Raphael, et al. Self-organization in Natural Swarms of Synchronous Fireflies. Science Advances. 7/28, 2021.
Spraque, Kyle, et al. Watch and Learn – A Generalized Approach for Transferrable Learning in Deep Neural Networks via Physical Principles. Machine Learning: Science and Technology. 2/2, 2021.
Wang, Yingxu, et al. On the Philosophical, Cognitive and Mathematical Foundations of Symbiotic Autonomous Systems. Philosophical Transactions of the Royal Society A. August, 2021.

Here is the initial midsummer full reference edition:

I. A Natural Genesis Vision: A Woman's Ecosmos Wisdome
A. Homo to Anthropo Sapiens: Historic Prescience

Phillips, Rob. Schrodinger’s What is Life?. at 75 Cell Systems. June, 2021.

B. An Earthuman Sapiensphere: A 21st Century Revolutionary Discovery
Cockell, Charles. The Equations of Life: How Physics Shapes Evolution. New York: Basic Books, 2018.
Davies, Paul. The Demon in the Machine: How Hidden Webs of Information are Solving the Mystery of Life. London: Allen Lane, 2019.
Gould, Roy. Universe in Creation: A New Understanding of the Big Bang and the Emergence of Life. Cambridge: Harvard University Press, 2018
Lovelock, James. Novacene: The Coming Age of Hyperintelligence. Cambridge: MIT Press, 2019.
Kuppers, Bernd-Olaf. The Language of Living Matter: How Molecules Acquire Meaning. International: Springer Frontiers, 2021.
West, Geoffrey. Scale: The Universal Laws of Growth, Innovation, Sustainability and the Pace of Life. New York: Penguin, 2017.

II. Earth Learn: A Planetary Prodigy Comes to Her/His Own Knowledge
3. The Book of Naturome: A New Translation

Turker, Sabrina and Gesa Hartwigsen. Exploring the Neurobiology of Reading through Non-invasive Brain Stimulation. Cerebral Cortex.. 141/497, 2021

4. World Natural PhiloSophia: An Ubuntu Universe
Diagne, Souleymane Bachir. Postcolonial Bergson. New York: Fordham University Press, 2019.
Nicholson, Daniel and John Dupre, eds. Everything Flows: Towards a Processual Philosophy of Biology. Oxford: Oxford University Press, 2018.

B. The Spiral of Science: Homo to Anthropo to Earthropo Sapiens
Bauer, Amanda, et al. Petabytes to Science. arXiv:190505116. .
Ju Harang, et al. The Network Structure of Scientific Revolutions. arXiv:2010.08381. .
Renn, Jurgen. The Evolution of Knowledge: Rethinking Science for the Anthropocene. Princeton: Princeton University Press, 2020.
Schutt, Kristof, et al, eds. Machine Learning Meets Quantum Physics. International: Springer, 2020.
Thessen, Anne, et al. From Reductionism to Reintegration. PLoS Biology. . March, 2021.
Tinetti, Giovanni, et al. Ariel: Enabling Planetary Science Across Light-Years. arXiv:2104.04824.. .
Yahdijan, Laura, et al. Why Coordinated Distributed Experiments Should Go Global. BioScience. . May, 2021.

1. EI: A Survey of Earthificial Deep Neural Network Learning
Anshu, Anurag, et al. Sample-efficient Learning of Interacting Quantum Systems. Nature Physics. . 17/8, 2021.
Bahri, Yasaman, et al. Statistical Mechanics of Deep Learning. Annual Review of Condensed Matter Physics. .11/501, 2020.
Spraque, Kyle, et al. Watch and Learn – A Generalized Approach for Transferrable Learning in Deep Neural Networks via Physical Principles. Machine Learning: Science and Technology. . 2/2, 2021.
Tzachor, Asaf, et al. Artificial Intelligence in a Crisis Needs Ethics with Urgency. Nature Machine Intelligence. . 2/365, 2020.
VanRullen, Rufin and Ryota Kanai. Deep Learning and the Global Workspace Theory. Trends in Neuroscience. . June, 2021.

C. Global Genius: A Collective, Intelligent, Worldwise Mindkinder
Bak-Coleman, Joseph, et al. Stewardship of Global Collective Behavior. Proceedings of the National Academy of Sciences. .118/27, 2021,
Gebhart, Thomas and Russell Funk. The Emergence of Higher-Order Structure in Scientific and Technological Knowledge Networks. arXiv:2009.13620.
Graham, Daniel. An Internet in Your Head: A New Paradigm for How the Brain Works. New York: Columbia University Press, 2021.
Heylighen, Francis and Marta Lenartowicz. The Global Brain as a Model of the Future Information Society. Technological Forecasting and Social Change.114/1, 2017.
Kaynak, Okyay, et al. Towards Symbiotic Autonomous Systems. Philosophical Transactions of the Royal Society A. August 2021.
Malone, Thomas. Superminds. Grand Haven, MI: Brilliance Publishing, 2019.
Zurn, Perry and Danielle Bassett. Network Architectures Supporting Learnability. Philosophical Transactions of the Royal Society B. . February, 2020.

III. Ecosmos: A Procreative Organic Habitable UniVerse
A. Quantum Cosmology Unity

Brahma, Suddhasattwa, et al. Universal Signature of Quantum Entanglement Across Cosmological Distances. arXiv:2107.06910. .
Coley, Alan and George Ellis. Theoretical Cosmology. Classial and Quantum Gravity. . 37/1, 2020.
Hartle, James. Arrows of Time and Initial and Final Conditions in the Quantum Mechanics of Closed Systems Like the Universe. arXiv:2002.07093.
Sanchez, Norma. New Quantum Phase of the Universe before Inflation. arXiv:1912.06655.. .

Smolin, Lee. Einstein’s Unfinished Revolution: the Search for What Lies Beyond the Quantum. New York: Penguin, 2019.
Wetterich, Christof. Fundamental Scale Invariance. arXiv:2007.08805.

1. A Galactic, Stellar, Planetary System Spacescape
Courtois, Helene. Finding Our Place in the Universe. Cambridge: MIT Press, 2019.
Kobayashi, Chiaki, et al. The Origin of Elements from Carbon to Uranium. arXiv:2008.04660.
Mendoza,, Edgar, et al. Interrelations between Astrochemistry and Galactic Dynamics. Frontiers in Astronomy and Space Sciences.. May, 2021.
Vogelsberger, Mark, et al. Cosmological Simulations of Galaxy Formation. Nature Reviews Physics. 2/1, 2020.
Wilding, Georg, et al. Persistent Homology of the Cosmic Web. arXiv:2011.12851.

2. Earth Alive: A Bio-Eco-Ovo Sphere Sustains Her/His Self
Bertrand, Philippe and Louis Legendre. Earth, Our Living Planet: The Earth System and its Co-evolution with Organisms. International: Springer Frontiers, 2021.
Irrgang, Christopher, et al. Towards Neural Earth System Modelling by Integrating Artificial Intelligence in Earth Systems Science. Nature Machine Intelligence. August 2021.
Jabr, Ferris. The Earth is just as Alive as You Are. New York Times. April 21, 2019.
Steffen, Will, et al. The Emergence and Evolution of Earth System Science. Nature Reviews Earth & Environment. 1/1, 2020.

3. Quantum Organics in the 21st Century
Ball, Philip. Beyond Weird: Why Everything You Thought You Knew about Quantum Physics Is Different. London: Bodley Head, 2018.
Berkelbach, Timothy and Michael Thoss. Dynamics of Open Quantum Systems. Journal of Chemical Physics. 152/020401, 2020.
Carrasquilla, Juan. Machine Learning for Quantum Matter. arXiv:2003.11040
Deutsch, Ivan. Harnessing the Power of the Second Quantum Revolution. PRX Quantum. 1/020101, 2020.
Spitz, Daniel, et al. Finding Universal Structures in Quantum Many-Body Dynamics via Persistent Homology. arXiv:2001.02616.

4. Novel ExoUniverse Studies
Kartvelishvili, Guram, et al. The Self-Organized Critical Multiverse. arXiv:2003.12594.
Ord, Toby. The Edges of Our Universe. arXiv:2104.01191.
Sandora, McCullen. Multiverse Predictions for Habitability: Fraction of Life that Develops Intelligence. arXiv:1904.11796.

B. An Animate Procreative Ecosmological Genesis
Gordon, Richard and Alexei Sharov, eds. Habitability of the Universe before Earth. Amsterdam: Academic Press/Elsevier, 2017.
Hazen, Robert. Symphony in C: Carbon and the Evolution of (Almost) Everything. New York: Norton, 2019.
Lingam, Manasvi and Abraham Loeb. Role of Stellar Physics in Regulating the Critical Steps for Life. arXiv:1804.02271.
Westall, Frances and Andre Brack. The Importance of Water for Life. Space Science Reviews. 214/2, 2018.

1. A Consilience of Biology and Physics: Active Matter
Alexandrov, Dmitri and Andrey Zubarev. Patterns in Soft and Biological Matters. Philosophical Transactions of the Royal Society A. April, 2020.
Fodor, Etienne and Cristina Marchetti. The Statistical Physics of Active Matter. arXiv:1708.08652.
Ghosh, Subhadip, et al. Enzymes as Active Matter. Annual Review of Condensed Matter. Vol. 12, 2020.
Katsnelson, Mikhail, et al. Towards Physical Principles of Biological Evolution. Physica Scripta. 93/4, 2018.
McFadden, Johnjoe and Jim Al-Khalili. The Origins of Quantum Biology. Proceedings of the Royal Society A. Vol.474/Iss.2220, 2018.

2. Systems Physics: Self-Organization
Drossel, Barbara. Strong Emergence in Condensed Matter Physics. arXiv:1909.01134.
Nakamura, Eita and Kunihiko Kaneko. Statistical Evolutionary Laws in Music Styles. Nature Scientific Reports. 9/15993, 2019.
Perc, Matjaz. Beauty in Artistic Expressions through the Eyes of Networks and Physics. Journal of the Royal Society Interface. March 11, 2020.

3. Supramolecular Systems Chemistry
Azevedo, Helena, et al. Complexity Emerges from Chemistry. Nature Chemistry. 12/9, 2020.
Ghosh, Abhik and Paul Kiparsky. Grammar of the Elements. American Scientist. November-December, 2019.
Grzybowski, Bartosz, et al. From Dynamic Self-Assembly to Networked Chemical Systems. Chemical Society Reviews. 46/5647, 2017.
McArdle, Sam, et al. Quantum Computational Chemistry. Review of Modern Physics. 92/015003, 2020.

4. Universal Evolution: A Celestial Expanse
Campbell, John O. and Michael Price. Universal Darwinism and the Origins of Order. Georgiev, Georgi, et al, eds. Evolution, Development and Complexity. International: Springer, 2019.
Newman, Stuart. Universal EvoDevo? Biological Theory. 13/67, 2018.
Jackson, Holly, et al. Using Heritability of Stellar Chemistry to Reveal the History of the Milky Way. arXiv:2011.06453.
Zurek, Wojciech. Emergence of the Classical from Within the Quantum Universe. arXiv:2107.03378.

C. The Information Computation Turn
Cuffaro, Michael and Samuel Fletcher. Physical Perspectives on Computation, Computational Perspectives on Physics. Cambridge: Cambridge University Press, 2018.
Davies, Paul. The Demon in the Machine: How Hidden Webs of Information are Solving the Mystery of Life. London: Allen Lane, 2019.
Ensslin, Torsten, et al. The Physics of Information. Annalen der Physik. 531/3, 2019.
Floridi, Luciano. The Logic of Information. Oxford: Oxford University Press, 2019.
Mora, Thierry, et al. Special Issue on Information Processing in Living Systems. Journal of Statistical Physics. 162/5, 2017.

1. A CoCreative Participatory UniVerse
Bynum, Terrell Ward. Ethics, Information, and Our “It-from-Bit” Universe. arXiv:1802.02029.
Fuchs, Christopher and Andrei Khrennikov. Quantum Information Revolution. Foundations of Physics. 50/12, 2020.
Gould, Roy. Universe in Creation: A New Understanding of the Big Bang and the Emergence of Life. Cambridge: Harvard University Press, 2018.
Mermin, David. Making Better Sense of Quantum Mechanics. Reports on Progress in Physics. 82/1, 2018.
Scharf, Caleb. The Ascent of Information: Books, Bits, Genes, Machines, and Life’s Unending Algorithm. New York: Riverhead Books, 2021.

D. Natural Econsciousness and Ecognition
Chittka, Lars and Catherine Wilson. Expanding Consciousness. American Scientist. November-December, 2019.
Gazzaniga, Michael. The Consciousness Instinct. New York: Farrar, Straus and Giroux, 2018.
Linde, Andrei. Universe, Life, Consciousness. www.andrei-linde.com/articles/universe-life-consciousness-pdf.
The Science of Consciousness. www.tsc2019-interlaken.ch.
Vanchurin, Vitaly. The World as a Neural Network arXiv:2008.01540.

E. A Thermodynamics of Life
Beck, Christian, et al. Nonextensive Statistical Mechanics, Superstatistics and Beyond: Theory and Applications in Astrophysical and Complex Systems. European Physical Journal Special Topics. 229/707, 2020.
Haddad, Wassim. A Dynamical Systems Theory of Thermodynamics. Princeton: Princeton University Press, 2019.
Jeffery, Kate, et al. On the Statistical Mechanics of Life: Schrodinger Revisited. Entropy. 21/12, 2019.
Nigmatullin, Ramil and Mikhail Prokopenko. Thermodynamic Efficiency of Interactions in Self-Organizing Systems. arXiv:1912.08948.

1. Quantum Thermodynamics
Binder, Felix, et al, eds. Thermodynamics in the Quantum Regime. International: Springer, 2021.
Wolchover, Natalie. The Quantum Thermodynamics Revolution. Quanta Magazine. Online May 2, 2017.

2. An Autocatalytic, Bootstrap EcosmoVerse
Adamski, Paul, et al. From Self-Replication to Replicator Systems en Route to de Novo Life. Nature Reviews Chemistry. 4/8, 2020.
Blokhuis, Alex, et al. Universal Motifs and the Diversity of Autocatalytic Systems. Proceedings of the National Academy of Sciences. 41/25230, 2020.
Dufour, Gwenaelle and Steven Charnley. Astrochemical Bistability: Autocatalysis in Oxygen Chemistry. Astrophysical Journal. 887/1, 2019.
Roy, Anjan, et al. A Unifying Autocatalytic Network-based Framework for Bacterial Growth Laws. Proceedings of the National Academy of Sciences. 118/33, 2021.
Wolchover, Natalie. Cosmic Triangles Open a Window to the Origin of Time. Quanta. October 29, 2019.
Xavier, Joana, et al. Autocatalytic Chemical Networks at the Origin of Metabolism Proceedings of the Royal Society B. March, 2020.

F. Systems Cosmology: Fractal SpaceTimeMatter
Aschwanden, Markus and Manuel Guedel.. Self-Organized Criticality in Stellar Flares. arXiv:2106.06490.
De Marzo, Giordano, et al. Zipf’s Law for Cosmic Structures. arXiv:2105:06110.
Deppman, Airton, et al. Fractals, Nonextensive Statistics, and QCD. Physical Review D. 101/034019, 2020.
Einasto, Jaan, et al. On Fractal Properties of the Cosmic Web. arXiv:2002.02813.
Feinstein, Adina, et al. Testing Self-Organized Criticality Across the Main Sequence using Stellar Flares from TESS. arXiv:2109.07011.
Gaite, Jose. Scale Symmetry in the Universe. Symmetry. 12/4, 2020.
Venkataramani, Shankar and Alan Newell. Pattern Dark Matter and Galaxy Scaling Relations. European Physical Journal Special Topics. June, 2021.

G. Anthropic, Biotropic, Earthropic Principles
Adams, Fred C. The Degree of Fine-Tuning in Our Universe – and Others. arXiv:1902.03928.
Slijepcevic, Predrag. Natural Intelligence and Anthropic Reasoning. Biosemiotics. July, 2020.

H. An Astrochemistry to Astrobiological Fertility
Cataldo, Franco, et al. Petroleum, Coal and Other Organics in Space. arXiv:2005.01162.
Cunningham, Maria, et al, eds. Astrochemistry VII: Through the Cosmos from Galaxies to Planets. Cambridge: Cambridge University Press, 2018.
Kolb, Vera, ed. Handbook of Astrobiology. Boca Raton: CRC Press, 2019.
Navrotsky, Alexandra and Kristina Lilova. Materials of the Universe: The Final Chemical Frontier. ACS Earth and Space Chemistry. 5/8, 2021.
Oberg, Karen and Edwin Bergin. Astrochemistry and Compositions of Planetary Systems. Physics Reports. October, 2020.
Yamagishi, Akihiko, et al. Astrobiology: From the Origins of Life to the Search for Extraterrestrial Intelligence. Singapore: Springer, 2019.

I. ExoPlanets, Solar Systems, Habitable Zones, Biosignature Census
Gaudi, B. Scott, et al. The Habitable Exoplanet Observatory Mission Concept Report. arXiv:2001:06683.
Gilbert, Gregory and Daniel Fabrycky. An Information Theoretic Framework for Classifying Exoplanetary System Architectures. arXiv:2003.11098.
Raymond, Sean and Alessandro Morbidelli. Planet Formation: Key Mechanisms and Global Models. arXiv:2002.05756.
Sandford, Emily, et al. On Planetary Systems as Ordered Sequences. arXiv:2105.09966.

IV. Ecosmomics: A Survey of Genomic Complex Network System Sources
Bizzarri, Mariano, et al. Complexity in Biological Organization: Key Concepts. Entropy. Online August 12, 2020.
Bornholdt, Stefan and Stuart Kauffman. Revisiting the Statistical Mechanics Perspective on Cellular Regulation. arXiv:1902.00483.
Krakauer, David, ed. Worlds Hidden in Plain Sight: The Evolving Idea of Complexity at the Santa Fe Institute 1984 – 2019. Santa Fe, NM: Santa Fe Institute Press, 2019.
Munoz, Miguel. Colloquium: Criticality and Dynamical Scaling in Living Systems. Reviews of Modern Physics. 90/031001, 2018.
Renken, Elena. Turing Patterns Turn Up in a Tiny Crystal. Quanta. August 10, 2021.
Thurner, Stefan, et al. Introduction to the Theory of Complex Systems. Oxford: Oxford University Press, 2018.

A. An Array of 21st Century Animate Features<
1. Network Physics: A Vital Anatomy and Physiology

Aleta, Alberto and Yamir Moreno. Multllayer Networks in a Nutshell. Annual Review of Condensed Matter Physics. 10, 2019.
Boguna, Marian, et al. Network Geometry. arXiv:2001.03241.
Chavalarias, David. From Inert Matter to the Global Society: Life as Multi-level Networks of Processes. Philosophical Transactions of the Royal Society B. February, 2020.
Gysi, Deisy and Katja Nowick. Construction, Comparison and Evolution of Networks in Life Sciences and Other Disciplines. Journal of the Royal Society Interface. May 2020.
Vespignani, Alessandro. Twenty Years of Network Science. Nature. 558/528, 2018.
Yang, Ruochen, et al. Hidden Network Generating Rules from Partially Observed Complex Networks. Communications Physics. 4/199, 2021.

2. Biteracy: Natural Algorithmic Computation
Dyson, George. Analogia: The Emergence of Technology beyond Programmable Control. New York: Farrar, Straus and Giroux, 2020.
Gregor, Karol and Frederic Besse. Self-Organizing Intelligent Matter. arXiv:2010.07627.
Molina, Daniel, et al. Comprehensive Taxonomies of Nature and Bio-inspired Optimization. Cognitive Computation. 12/897, 2020.
Stepney, Susan, et al, eds. Computational Matter. International: Springer, 2018.
Thompson, Sarah, et al. The Fractal Geometry of Fitness Landscapes at the Local Optima Level. Natural Computing. December, 2020.

3. Iteracy: A Rosetta Ecosmos Textuality
Bost, Xavier and Vincent Labatut. Extraction and Analysis of Fictional Character Networks. ACM Computing Surveys. 52/5, 2019.
Coecke, Bob. The Mathematics of Text Structure. arXiv:1904.03478.
Linzen, Tal and Marco Baroni. Syntactic Structure from Deep Learning. Annual Review of Linguistics. Volume 7, January, 2021.
Ramirez-Arellano, Aldo. Classification of Literary Works: Fractality and Complexity of the Narrative, Essay, and Research Article. Entropy. 22/8, 2020.
Torre, Ivan, et al. On the Physical Origin of Linguistic Laws and Lognormality in Speech. Royal Society Open Science. 6/8, 2019.
Zaharchuk, Holly and Elizabeth Karuza. Multilayer Networks: An Untapped Tool for Understanding Bilingual Neurocognition. Brain and Language. Volume 220, 2021.

4. Universality Affirmations: A Critical Complementarity
Bastidas, Victor, et al. Chimera States in Quantum Mechanics. arXiv:1807.08056.
Chialvo, Dante. Life at the Edge: Complexity and Criticality in Biological Function. arXiv:1810.11737.
Daniels, Bryan, et al. Criticality Distinguishes the Ensemble of Biological Regulatory Networks. Physical Review Letters. 121/138102, 2018.
Jensen, Henrik. Brain, Rain and Forest Fires: What is Critical about Criticality: In Praise of the Correlation Function. arXiv:2106.09389.
Kartvelishvili, Guram, et al. The Self-Organized Critical Multiverse. arXiv:2003.12594.
Morales, Guillermo and Miguel Munoz. Optimal Input Representation in Neural Systems at the Edge of Chaos. arXiv:2107.05709.
Peruzzo, Fabio, et al. Spatial Patterns Emerging from a Stochastic Process near Criticality. arXiv:1907.08852.
Tadic, Bosiljka. Self-Organized Criticality and Emergent Hyperbolic Networks: Blueprint for Complexity in Social Dynamics. European Journal of Physics. 40/2, 2019.
Zakharova, Anna. Chimera Patterns in Networks. International: Springer, 2020.

B. Our Own HumanVerse Genome Studies
Barabasi, Daniel and Albert-Laszlo Barabasi. A Genetic Model of the Connectome. Neuron 105/1, 2020.
Cowen, Lenore, et al. Network Propagation: A Universal Amplifier of Genetic Associations. Nature Review Genetics. 18/551, 2020.
Eraslan, Gokcen, et al. Deep Learning: New Computational Modelling Techniques for Genomics. Nature Reviews Genetics. 20/7, 2019.
Koonin, Eugene and Artem Novozhilov. Origin and Evolution of the Universal Genetic Code. Annual Review of Genetics. 51/45, 2017.
Misteli, Tom. The Self-Organizing Genome. Cell. 183/1, 2020.
Snyder, Michale, et al. Perspectives on ENCODE. Nature. 583/693, 2020.

1. Paleogenomics, Archaeogenomics: Natural Ancestry
Benitez-Burraco, Antonio and Dan Dediu. Ancient DNA and Language. Journal of Language Evolution. 3/1, 2018.
Skoglund, Pontus and Iain Mathieson. Ancient Human Genomics: The First Decade. Annual Review of Genomics and Human Genetics. Vol. 19, 2018.

2. The Deep Affinity of Genomes and Languages
Chen, Patrick and Jonathan Flint. What Connectomics can Learn from Genomics. PLoS Genetics. July, 2021.
Faltynek, Dan, et al. On the Analogy between the Genetic Code and Natural Language by Sequence Analysis. Biosemiotics. Online April, 2019.
Wang, Li-Min, et al. Mechanism of Evolution Shared by Genes and Language. arXiv:2012.14309.
Zolyan, Suren and Renad Zhdanov. Genome as (hyper)Text: From Metaphor to Theory. Semiotica. 225/1, 2018.

3. Whole Genome Regulatory Systems: DNA + AND
Daban, Joan-Ramon. Soft-Matter Properties of Multilayer Chromosomes. Physical Biology. 18/5, 2021.
Finn, Elizabeth and Tom Misteli. Molecular Basis and Biological Function of Variability in Spatial Genome Organization. Science. 365/998, 2019.
Gourab, Ghosh Roy, et al. Bow-Tie Architecture of Gene Regulatory Networks in Species of Varying Complexity. Journal of the Royal Society Interface. June 2021.
Rubenstein, Dustin, et al. Coevolution of Genome Architecture and Social Behavior. Trends in Ecology & Evolution. Online May, 2019.
Verd, Berta, et al. Modularity, Criticality, and Evolvability of a Developmental Gene Regulatory Network. eLife. 8/e43832, 2019.

V. Systems Evolution: A 21st Century Genesis Synthesis
Bapteste, Eric and Philippe Huneman. Towards a Dynamic Interaction Network of Life to Unify and Expand the Evolutionary Theory. BMC Biology. 16/56, 2018.
Bonduriansky, Russell and Troy Day. Extended Heredity: A New Understanding of Inheritance and Evolution. Princeton: Princeton University Press, 2018.
Bonner, John T. The Evolution of Evolution. Journal of Experimental Zoology B. 332/8, 2020.
Jaeger, Johannes and Nick Monk. Dynamic Modules in Metabolism, Cell and Developmental Biology. Interface Focus. April, 2021.
Manrubia, Susanna, et al. From Genotypes to Organisms: State of the Art and Perspectives of a Cornerstone in Evolutionary Dynamics. arXiv:2002:00363.
McGhee, George. Convergent Evolution on Earth: Lessons for the Search for Extraterrestrial Life. Cambridge: MIT Press, 2019.
Nghe, Philippe, et al. Predicting Evolution Using Regulatory Architecture. Annual Review of Biophysics. Volume 49, 2020.
Noble, Denis. The Illusions of the Modern Synthesis. Biosemiotics. 14/1, 2021.
Reiskind, Martha, et al. Nothing in Evolution Makes Sense Except in the Light of Biology. BioScience. 71/4, 2021.
Sukhoverhov, Anton and Nathalie Gontier. Non-Genetic Inheritance: Evolution above the Organismal Level. Biosystems. December, 2020.
Verd, Berta and Ruben Perez-Carrasco. Interdisciplinary Approaches to Dynamics in Biology. Interface Focus. April, 2021.

A. A Major Evolutionary Transitions Scale
Carmel, Yohay and Ayelet Shavit. Operationalizing Evolutionary Transitions in Individuality. Proceedings of the Royal Society B. February, 2020.
Davison, Dinah, et al.. Did Human Culture Emerge in a Cultural Evolutionary Transition in Individuality? Biological Theory. July, 2021.
Furukawa, Hikaru and Sara Imari Walker. Major Transitions in Planetary Evolution. Ikegami, Takashi, et al, eds. ALIFE 2018 Conference Proceedings. Cambridge: MIT Press, 2018.
Waring, Timothy and Zachary Wood. Long-term Gene-culture Coevolution and the Human Evolutionary Transition. Proceedings of the Royal Society B. May, 2021.

B. Systems Network Biology and Genetics
Cavagna, Andrea, et al. Physical Constraints in Biological Collective Behavior. Current Opinion in Systems Biology. 9/49, 2018.
Crombach, Anton, ed. Evolutionary Systems Biology. International: Springer, 2021.
DiFrisco, James and Johannes Jaeger. Genetic Causation in Complex Regulatory Systems: An Integrative Dynamic Perspective. BioEssays. 42/6, 2020.
Gazestani, Vahid and Nathan Lewis. From Genotype to Phenotype: Augmenting Deep Learning with Networks and Systems Biology. Current Opinion in Systems Biology. 15/68, 2019.
Ingalls, Brian. Mathematical Modeling in Systems Biology. Cambridge: MIT Press, 2020.

C. Evoinformatics: A Biosemiotic Quality
Barbieri, Marcello. The Semantic Theory of Language. Biosystems. January, 2020.
Lackova, Ludmila and Dan Faltynek. Can Quantitative Approaches Develop Bio/Semiotic Theory? Biosemiotics. August, 2021.
Marijuan, Pedro, et al.. Fundamental, Quantitative Traits of the “Sociotype.” Biosystems. Volume 180, 2019.
Prosdocimi, Francisco and Savio Torres de Farias. Life and Living Beings under the Persepctive of Organic Macrocodes. Biosystems. May, 2021.

D. An Evolutionary Intelligence Arises
Brun-Usan, Miguel, et al.. How to Fit In: The Learning Principles of Cell Differentiation. PLoS Computational Biology. April, 2020.
Dodig-Crnkovic, Gordana. Morphological Computation and Learning to Learn in Natural Intelligent Systems and AI. arXiv:2004.02304.
Hasson, Uri, et al. Direct Fit to Nature: An Evolutionary Perspective on Biological and Artificial Neural Networks. Neuron. 105/3, 2020.
Katsnelson, Mikhail, et al. Self-Organized Criticality in Neural Networks. arXiv:2107.03402
Szilagyi, Andras, et al. Phenotypes to Remember: Evolutionary Developmental Memory Capacity and Robustness. PLoS Computational Biology. November 30, 2020.

VI. Earth Life Emergence: Development of Body, Brain, Selves and Societies
A. A Further Report of Common Principles

Asllani, Malbor, et al. A Universal Route to Pattern Formation. arXiv:1906.05946.
Bagrow, James and Eric Bolit. An Information-Theoretic, All-Scales Approach to Comparing Networks. Applied Network Science. 4/45, 2019.
Garcia-Ruiz, Ronald and Adam Vernon. Emergence of Simple Patterns in Many-Body Systems from Macroscopic Objects to the Atomic Nucleus. arXiv:1911.04819.
Goldenfeld, Nigel, et al. Universal Biology and the Statistical Mechanics of Early Life. Philosophical Transactions of the Royal Society A. Vol. 375/Iss. 2109, 2017.
Ribeiro, Tiago, et al. Scale-Free Dynamics in Animal Groups and Brain Networks. Frontiers in Systems Neuroscience. January 2021.
Sinha, Saurabh, et al. Behavior-related Gene Regulatory Networks: A New Level of Organization in the Brain. Proceedings of the National Academy of Sciences. 117/23270, 2020.
Zhang, Mengsen, et al. Connecting Empirical Phenomena and Theoretical Models of Biological Coordination across Scales. Journal of the Royal Society Interface. Online August, 2019.

B. Nested Gestation of Communal Creatures
1. Geosphere, Hydrosphere, Atmosphere

Bonetti, Sara, et al. Channelization Cascade in Landscape Evolution. Proceedings of the National Academy of Sciences. 117/1375, 2020.
Cornacchia, Loreta, et al. Self-Organization of River Vegetation. Proceedings of the Royal Society B. July, 2020.
Ferreira, Douglas, et al. Long-range Correlation Studies in Deep Earthquakes Global Series. Physica A. Online August 27, 2020.
Rak, Rafal, et al. Universal Features of Mountain Ridge Networks on Earth. Journal of Complex Networks. May, 2019.

2. The Origins of Life
Baross, John, et al. The Environmental Roots of the Origin of Life. Meadows, Victoria, et al, eds. Planetary Astrobiology. Tempe: University of Arizona Press, 2020.
Camprubi, Eloi, et al. The Emergence of Life. Space Science Reviews. 215/56, 2019.
Cardoso, Silvana, et al. Chemobrionics: From Self-Assembled Material Architectures to the Origin of Life. Artificial Life. 26/3, 2020.
Deamer, David. Assembling Life: How Can Life Begin on Earth and Other Habitable Planets?. New York: Oxford University Press, 2019.
Fahrenbach, Albert and Quoc Phuong Tran. Prebiotic Metabolism gets a Boost. Nature Chemsitry. 12/11, 2020.
Prosdocimi, Francisco, et al. The Theory of Chemical Symbiosis: A Margulian View for the Original Emergence of Biological Systems. Acta Biotheoretica. August, 2020.
Walker, Sara Imari and Cole Mathis. Network Theory in Prebiotic Evolution. Menor-Salvan, Cesar, ed. Prebiotic Chemistry and Chemical Evolution of Nucleic Acids International: Springer, 2018.

3. Microbial Colonies
Allen, Rosalind and Bartlomiej Waclaw. Bacterial Growth: A Statistical Physicist’s Guide. Reports on Progress in Physics. 82/1, 2018.
Artiga, Marc. Bacterial Communication. Biology and Philosophy. 36/4, 2021.
Dinet, Celine, et al. Linking Single-Cell Decisions to Collective Behaviors in Social Bacteria. Philosophical Transactions of the Royal Society B. Volume 1820, January, 2021
Menon, Shakti, et al. Information Integration and Collective Motility in Phototactic Cyanobacteria. PLoS Computational Biology. April, 2020.
Roy, Anjan, et al. A Unifying Autocatalytic Network-based Framework for Bacterial Growth Laws. Proceedings of the National Academy of Sciences. 118/33, 2021.
Wong, Gerard, et al. Roadmap Concepts in the Physical Biology of Bacterial Biofilms. Physical Biology. 18/051501, 2021.

4. Cellular Holobiont Symbiogenesis
Bosch, Thomas, et al. Evolutionary “Experiments” in Symbiosis. BioEssays.Online May, 2019.
Igamberdiev, Abir, et al, eds. Symbiogenesis and Progressive Evolution. Biosystems. April, 2021.
Mitchison, Timothy and Christine Field. Self-Organization of Cellular Units. Annual Review of Cell and Developmental Biology. Volume 37/October 2021.
Singharoy, Abhishek, et al. Atoms to Phenotypes: Molecular Design Principles of Cellular Energy Metabolism. Cell. 179/1098, 2019.
Slijepcevic, Predrag. Serial Endosymbiosis Theory: From Biology to Astronomy and Back to the Origin of Life. Biosystems. April, 2021.
Suarez, Javier and Vanessa Trivino. A Metaphysical Approach to Holobiont Individuality. Quaderns de Filosofia. 6/1, 2019.
Wang, Xiaoliang and Dongyun Bai. Self-Organization Principles of Cell Cycles and Gene Expressions in the Development of Cell Populations. arXiv:2105.07337.

5. Multicellular Fauna and Flora Organisms
Asllani, Malbor, et al. A Universal Route to Pattern Formation in Multicellular Systems. European Physical Journal B. 93/7, 2020.
Fisher, R. M., et al. The Evolution of Multicellular Complexity. Proceedings of the Royal Society B. July, 2020.
Halatek, Jacob, et al. Self-Organization Principles of Intracellular Pattern Formation. Philosophical Transactions of the Royal Society B. Vol.373/Iss.1747, 2018.
Larson, Ben, et al. Biophysical Principles of Choanoflagellate Self-Organization. Proceedings of the National Academy of Sciences. 117/1303, 2020.
Newman, Stuart, et al. The Vertebrate Limb: An Evolving Complex of Self-Organizing Systems. Progress in Biophysics and Molecular Biology. 137/12, 2018.
Wedlich-Soldner, Roland and Timo Betz. Self-Organization: The Fundament of Cell Biology. Philosophical Transactions of the Royal Society B. Vol.373/Iss.1747, 2018.

6. Cooperative Societies
Bahar, Sonja. The Essential Tension: Cooperation and Competition in Biological Evolution. Switzerland: Springer Frontiers, 2017.
Brask, Josefine, et al. Animal Social Networks: An Introduction for Complex Systems Scientists. Journal of Complex Networks. 9/2, 2021.
Fotouhi, Babak, et al. Evolution of Cooperation of Large Networks with Community Structure. Journal of the Royal Society Interface. March, 2019.
Grueter, Cyril, et al. Multilevel Organization of Animal Society. Trends in Ecology and Evolution. May, 2020
Kappeler, Peter, et al. Social Complexity: Patterns, Processes, and Evolution. Behavioral Ecology and Sociobiology. 73/1, 2019.
Ribeiro, Tiago, et al. Scale-Free Dynamics in Animal Groups and Brain Networks. Frontiers in Systems Neuroscience. January 2021.
Wright, Colin, et al. Collective Personalities. Behavioral Ecology and Sociobiology. 73/3, 2019.

7. Dynamic Ecosystems
Bohdalkova, Eliska, et al. Universality in Biodiversity Patterns: Variation in Species Temperature and Species-Productivity Relationships. Ecography: A Journal of Space and Time in Ecology. 44/9, 2021.
Fortin, Marie-Josee, et al. Network Ecology in Dynamic Landscapes. Proceedings of the Royal Society B. April, 2021.
Franklin, Oskar, et al. Organizing Principles for Vegetation Dynamics. Nature Plants. 6/5, 2020.
Ibarra, Jose, et al. Nurturing Resilient Forest Biodiversity: Nest Webs as Complex Adaptive Systems. Ecology and Society. 5/2, 2020.
Nordbotten, Jan, et al. Ecological and Evolutionary Dynamics of Interconnectedness and Modularity. Proceedings of the National Academy of Sciences. 115/750, 2018.
Peters, Debra, et al. An Integrated View of Complex Landscapes. BioScience. 68/9, 2018.
Shade, Ashley, et al. Macroecology to Unite All Life, Large and Small. Trends in Ecology & Evolution. September, 2018.
Zhao, Li-Xia, et al. The Shaping Role of Self-Organization: Linking Vegetation Patterning, Plant Traits and Ecosystem Functioning. Proceedings of the Royal Society B. Vol.286/Iss.1900, 2019.

8. Multiple Ancestries of Homo Sapiens
Buskes, Chris. The Encultured Primate: Thresholds and Transitions in Hominin Cultural Evolution. Philosophies. 4/1, 2019.
Cepelewicz, Jordana. Fossil DNA Reveals New Twists in Modern Human Origins. Quanta Magazine. August 30, 2019.
Maslin, Mark. The Cradle of Humanity: How the Changing Landscape of Africa Made Us So Smart . Oxford: Oxford University Press, 2017.
Mounier, Aurelien and Marta Mirazon Lahr. Deciphering African Late Middle Pleistocene Hominin Diversity and the Origin of Our Species. Nature Communications. 10/3406, 2019.
Tylen, Kristian, et al. The Evolution of Early Symbolic Behavior in Homo Sapiens. Proceedings of the National Academy of Sciences. 117/4578, 2020.

C. Quickening Encephalization and Sensibility
1. The Evolution of Cerebral Form and Cognizance

Briscoe, Steven and Clifton Ragsdale. Homology, Neocortex, and the Evolution of Developmental Mechanisms. Science. 362/190, 2018.
Changeux, Jean-Pierre, et al. A Connectomic Hypothesis for the Hominization of the Brain. Cerebral Cortex. 31/5, 2021
Godfrey-Smith, Peter. Metazoa: Animal Life and the Birth of the Mind . New York: Farrar, Straus and Giroux, 2021.
Lyon, Pamela, et al. Basal Cognition: Conceptual Tools and the View from the Single Cell. Philosophical Transactions of the Royal Society B. Volume 1820, January, 2021.
Melchionna, M., et al. Macroevolutionary Trends of Brain Mass in Primates. Biological Journal of the Linnean Society. 129/1, 2020.
Pontes, Anselmo, et al. The Evolutionary Origin of Associative Learning. American Naturalist. 195/1, 2020.
Roumazeilles, Lea, et al. Longitudinal Connections and the Organization of the Temporal Cortex in Macaques, Great Apes, and Humans. PLOS Biology. July, 2020.
Smaers, Jeoroen, et al. The Evolution of Mammalian Brain Size. Science Advances. 7/18, 2021.

2. An Emergent Bicameral Brain
Forrester, Gillian, et al, eds. Cerebral Lateralization and Cognition. Progress in Brain Research. Volume 238, 2018.
Godfrey-Smith, Peter. Integration, Lateralization, and Animal Experience. Mind & Language. 36/2, 2021.
Gunturkun, Onur, et al.. Brain Lateralization: A Comparative Perspective. Physiological Reviews. 100/1019, 2020.
Vallortigara, Giorgio and Lesley Rogers. A Function for the Bicameral Mind. Cortex. Online December, 2019.

3. Animal Intelligence and Sociality
Birch, Jonathan, et al. Dimensions of Animal Consciousness. Trends in Cognitive Science. August 2020.
Marino, Lori and Debra Merskin. Intelligence, Complexity, and Individuality in Sheep. Animal Sentience. Vol. 4, 2019.
Regolin, Lucia and Giorgia Vallortigara. Rethinking Cognition: From Animal to Minimal. Biochemical and Biophysical Research Communications. Volume 564, 2021.
Rowlands, Mark. Can Animals Be Persons? New York: Oxford University Press, 2019.
Simard, Suzanne. Finding the Mother Tree: Discovering the Wisdom of the Forest. New York: Knopf, 2021.
Vonk, Jennifer and Todd Shackelford, eds. Encyclopedia of Animal Cognition and Behavior. International: Springer, 2019.
Whiten, Andrew. Cultural Evolution in Animals. Annual Review of Ecology, Evolution, and Systematics. Volume 50, 2019.

4. Organisms Evolve Rhythmic Protolanguage Communication
Belyk, Michel and Steven Brown. Perception of Affective and Linguistic Prosody. Social Cognitive and Affective Neuroscience. 9/9, 2021.
Benitez-Burraco, Antonio and Ljiljana Progovac. Reconstructing Prehistoric Languages. Philosophical Transactions of the Royal Society B. Volume 1824, March, 2021.
Massip-Bonet, Angels, et al, eds. Complexity Applications in Language and Communication Sciences. International: Springer, 2019.
Prieur, Jacques, et al. The Origins of Gestures and Language. Biological Reviews. 95/3, 2020.

D. An Enhancement of Autonomous Individuality
Ball, Philip. Life with Purpose. Aeon. November 12, 2020.
Delafield-Butt, Jonathan. Agency and Choice in Evolution. Biosemiotics. 14/1, 2021.
Hanschen, Erik, et al. Individuality and the Major Evolutionary Transitions. Gissis, Snait, et al, eds. Landscapes of Collectivity in the Life Sciences. Cambridge: MIT Press, 2018.
Militello, Guglielmo, et al. Functional Integration and Individuality in Prokaryotic Collective Organisations. Acta Biotheoretica. August, 2020.
Noble, Denis. The Illusions of the Modern Synthesis. Biosemiotics. 14/1, 2021.
Ratcliff, William, et al. Nascent Life Cycles and the Emergence of Higher-Level Individuality. Philosophical Transactions of the Royal Society B. 372/1735, 2018.

E. Universal Gestation: Phylogeny and Ontogeny
Kohsokabe, Takahiro and Kunihiko Kaneko. Dynamical Systems Approach to Evolution–Development Congruence. Journal of Experimental Biology. B. February, 2021.

VII. Our Earthuman Moment: A Major Evolutionary Transition in Individuality
A. Human/Wuman Beings: Integral Microcosmic Persons
1. Systems Physiology and Psychology: Somatic and Behavioral Development

Bonzanni, Mattia, et al. On the Generalization of Habituation. BioEssays. 41/7, 2019.
Cao, Miao, et al. Developmental Connectomics from Infancy through Early Childhood. Trends in Neuroscience. 40/8, 2019.
Dehaene, Stanislav. How We Learn. New York: Viking, 2020.
Zhu, Meng and Magdalena Zernicka-Goetz. Principles of Self-Organization of the Mammalian Embryo. Cell. 183/6, 2020.

2. Systems Neuroscience: Multiplex Networks and Critical Function
Bassett, Danielle, et al. Reflections on the Past Two Decades of Neuroscience. Nature Reviews Neuroscience. September, 2020.
Bertolero, Maxwell and Danielle Bassett. On the Nature of Explanations Offered by Network Science: A Perspective from and for Neuroscientists. arXiv:1911.05031.
Betzel, Richard. Network Neuroscience and the Connectomics Revolution. arXiv:2010.01591.
Dresp-Langley, Birgitta. Seven Properties of Self-Organization in the Human Brain. Big Data and Cognitive Computing. 4/2, 2020.
Graham, Daniel, et al. Network Communication in the Brain. Network Neuroscience. 4/4, 2020.
Lofti, Nastaran, et al. Statistical Complexity is Maximized Close to Criticality in Cortical Dynamics. arXiv:2010.040123.
Majhi, Soumen, et al. Chimera States in Neuronal Networks. Physics of Life Reviews. September, 2018.

3. A Complementary Brain and Thought Process
Albouy, Philippe, et al. Distinct Sensitivity to Spectrotemporal Modulation Supports Brain Asymmetry for Speech and Melody. Science. 367/1043, 2020.
Friederici, Angela. Language in Our Brain: The Origins of a Uniquely Human Capacity . Cambridge: MIT Press, 2017.
Hartwigsen, Gesa, et al. How does Hemispheric Specialization Contribute to Human-defining Cognition?. Neuron. 109/13, 2021.
McGilchrist, Iain. The Master and His Emissary. New Haven: Yale University Press, 2019.
O’Reilly, Randall, et al. The Structure of Systematicity in the Brain. arXiv.2108.03387.
Schore, Allan. The Development of the Unconscious Mind. New York: Norton, 2019.
Singer, Wolf. Recurrent Dynamics in the Cerebral Cortex: Integration of Sensory Evidence with Stored Knowledge. Proceedings of the National Academy of Sciences. 118/33, 2021.
Tadic, Bosiljka, et al. Functional Geometry of Human Connectomes. Nature Scientific Reports. 9/12060, 2019.

4. Conscious Integrated Information Knowledge
Aru, Jaan, et al. Cellular Mechanisms of Conscious Processing. Trends in Cognitive Sciences. September, 2020.
Esteban, Francisco, et al. Informational Structures: A Dynamical System Approach for Integrated Information. PLoS Computational Biology. September, 2018.
Ginsburg, Simona and Eva Jablonka. The Evolution of the Sensitive Soul: Learning and the Origins of Consciousness. Cambridge: MIT Press, 2019.
Koch, Christof. The Feeling of Life Itself. Cambridge: MIT Press, 2019.
Mashour, George, et al. Conscious Processing and the Global Neuronal Workspace Hypothesis Neuron. 105/5, 2020.
Palmer, Tim. Human Creativity and Consciousness. arXiv:2002.03738.
Popiel, Nicholas, et al. The Emergence of Integrated Information, Complexity, and “Consciousness” at Criticality. Entropy. 22/3, 2020.

5. Half the UniVerse: A Woman's 2020 Wisdome
Keresztes, Laszlo, et al. Identifying Super-Feminine, Super-Masculine and Sex-Defining Connections in the Human Braingraph. arXiv:1912.02291.
Kolbert, Kathryn and Julie Kay. Controlling Women: What We must do Now to Save Reproductive Freedom. New York: Hachette, 2021.
Llorens, Anais, et al. Gender Bias in Academia. Neuron. 109/13, 2021.
Naranjo, Claudio Benjamin. The Patriarchal Mind as the Ignored Root of Interpersonal and Social Pathologies. World Futures. Online November, 2017.
Scheuringer, Andrea et al. Recruiting the Right Hemisphere: Sex Differences in Inter-Hemisphere Communication during Semantic Verbal Fluency. Brain and Language. August, 2020.
Tadic, Bosiljka, et al. Functional Geometry of Human Connectome and Robustness of Gender Differences. arXiv:1904.03399.

6. Our Holosymbiotic Personal Selves
Bolis, Dimitris and Leonhard Schilbach. “I Interact Therefore I Am:” The Self as an Historical Product of Dialectical Attunement. Topoi. 39/2, 2020.
Ciaunica, Anna. The Relational Self: Basic Forms of Self-Awareness. Topoi. 39/2, 2020.
Heersmink, Richard. Varieties of the Extended Self. Consciousness and Cognition. September, 2020.
O'Malley, Maureen. From Endosymbiosis to Holobionts. Journal of Theoretical Biology. Online March, 2017.
Rees, Tobias, et al. How the Microbiome Challenges Our Concept of Self. PLoS Biology. February, 2018.

B. EarthKinder: A Personsphere Progeny
1. A Cultural (Geonome) Code : Systems Linguistics

Brand, C. O., et al. Analogy as a Catalyst for Cumulative Cultural Evolution. Trends in Cognitive Science. March, 2021.
Diessel, Holger. The Grammar Network: How Linguistic Structure is Shaped by Language Use . Cambridge: Cambridge University Press, 2019.
Martin, Andrea and Giosue Baggio. Modelling Meaning Composition from Formalism to Mechanism. Philosophical Transactions of the Royal Society B. 375/20190298, 2019.
Oudeyer, Pierre-Yves, et al. Computational and Robotic Models of Early Language Development. arXiv:1903.10246.
Raimondi, Vincenzo. The Bio-Logic of Languaging and its Epistemological Background Language Sciences. Online March, 2018.

2. Complex Local to Global Network Biosocieties
Boon, Eva, et al, eds. Foundations of Cultural Evolution. Philosophical Transactions of the Royal Society B. May, 2021.
Contoyiannis, Y., et al. Self-Organized Criticality in an Epidemic Spread Model. arXiv:2004.00682.
Drozdz, Stanislaw, et al. Complexity in Economic and Social Systems. Entropy. April, 2020.
Hall, Gavin and William Bialek. The Statistical Mechanics of Twitter. arXiv:1812.07029.
Notamuzi, Daniele, et al. Universality, Criticality and Complexity of Information Propagation in Social Media. arXiv:2109.00116.
Perc, Matjaz. The Social Physics Collective. Nature Scientific Reports. 9/16459, 2019.
Schlapfer, Markus, et al. The Universal Visitation Law of Human Mobility. Nature. 593/522, 2021.
Schweitzer, Frank. Sociophysics. Physics Today February, 2018.
Spaget, Michael, et al. Toward a Unified Understanding of Casualty Distributions in Human Conflict. arXiv:1911.01994.

3. Planetary Physiosphere: Anatomics, Economics, Urbanomics
Arthur, W. Brian. Foundations of Complexity Economics. Nature Review Physics. 3/2, 2021.
Bardoscia, Marco, et al. The Physics of Financial Networks. arXiv:2103.05623.
Cogdell, Christina. Toward a Living Architecture?: Complexism and Biology in Generative Design . Minneapolis: University of Minnesota Press, 2019.
D’Acci, Luce, ed. The Mathematics of Urban Morphology. Springer: Birkhauser, 2019.
Gelfand, Michele. The Relationship Between Cultural Tightness - Looseness and COVID-19 Cases and Deaths: A Global Analysis. Lancet Planetary Health. January, 2021.
Lobo, Jose, et al. Urban Science: Integrated Theory from the First Cities to Sustainable Metropolises. SSRN Electronic Journal. January, 2020.
Schlapfer, Markus, et al. The Hidden Universality of Movement in Cities. arXiv:2002.06070.

4. A Complementarity of Civilizations
Bao, Yan, et al. Complementarity as Generative Principle: A Thought Pattern for Aesthetic and Cognitive Appreciations. Frontiers in Psychology. Online May, 2017.
De Oliveira, Stephanie and Richard Nisbett. Beyond East and West: Cognitive Style in Latin America. Journal of Cross-Cultural Psychology. 48/10, 2017.
Henrich, Joseph and Michael Muthukrishna. The Origins and Psychology of Human Cooperation. Annual Review of Psychology. 72/207, 2020.
Poppel, Ernst. East of West, West of East: A Matter of Global and Local Identity. Cognitive Processing. 19/S.1, 2018.
Proust, Joelle and Martin Fortier, eds. Metacognitive Diversity. Oxford: Oxford University Press, 2018.
Saroglou, Vassilis, et al. Believing, Bonding, Behaving, and Belonging: The Cognitive, Emotional, Moral, and Social Dimensions of Religiousness across Cultures. Journal of Cross-Cultural Psychology. 51/7-8, 2020.

7. Systems History: Personal and Planetary Individuation
Balbi, Amedeo. A History of Cosmic Habitability. Journal of Big History. 4/2, 2020.
Boyer, Pascal. Minds Make Societies: How Cognition Explains the World Humans Create. New Haven: Yale University Press, 2018.
Korotayev, Andrey and David LePoire, eds. The 21st Century Singularity and Global Futures: A Big History Perspective. International: Springer, 2020.
Krakauer, David, et al, eds. History, Big History, & Metahistory. Santa Fe: SFI Press, 2018.
Volk, Tyler. The Metapattern of General Evolutionary Dynamics and the Three Realms of Big History. Journal of Big History3, 2021.
Turchin, Peter, et al. Quantitative Historical Analysis Uncovers a Single Dimension of Complexity that Structures Global Variation in Human Social Organization. Proceedings of the National Academy of Sciences. 115/2, 2018.

VIII. Pedia Sapiens: A New Genesis Future
A. The Old World: Its Critical Life Support Condition

Diamond, Jared. Upheaval: Turning Points for Nations in Crisis . New York: Little, Brown, 2019.
Kieran, David and Edwin Martini, eds. At War: The Military and American Culture. New Brunswick, NJ: Rutgers University Press, 2018.
Kolbert, Elizabeth. Under a White Sky: The Nature of the Future . New York: Penguin Random House, 2021.
Maycock, Tom, Editor in Chief. IPCC Assessment Report 6: Intergovernmental Panel on Climate Change. United Nations, 2021.
McKibben, Bill. Falter: Has the Human Game Begun to Play Itself Out? New York: Henry Holt, 2019.
Turner, Monica, et al. Climate Change, Ecosystems and Abrupt Change. Philosophical Transactions of the Royal Society B. January, 2020.
Wallace-Wells, David. The Uninhabitable Earth: Life After Warming. New York: Tim Duggan/Crown, 2019.

1. An Anthropocene to Earthropocene Moment
Chure, Griffin, et al. The Anthropocene by the Numbers: A Quantitative Snapshot of Humanity’s Influence on the Planet. arXiv:2101.09620.
Rodriques, Pablo and Catarina Lira. The Bio-Evolutionary Anthropocene Hypothesis. Biological Theory. Online July, 2019.
Shoshitaishvili, Boris. From Anthropocene to Noosphere: The Great Acceleration. Earth's Future. 9/2, 2020.
Steffen, Will, et al. Trajectories of the Earth System in the Anthropocene. Proceedings of the National Academy of Sciences. 115/8252, 2018.

2. Global Climate Change as a Complex Dynamical System
Boers, Niklas, et al. Complex Systems Approaches for Earth System Data Analysis. Journal of Physics: Complexity. April, 2021.
Fan, Jingfang, et al. Statistical Physics Approaches to the Complex Earth System. arXiv:2009.04918.
Ghil, Michael and Valerio Lucarini. The Physics of Climate Variability and Climate Change. Reviews of Modern Physics. Online March, 2020.
Holme, Petter and Juan Rocha. Networks of Climate Change. arXiv:2105.12537.
Lana, Xavier, et al. Multifractal Structure of the Monthly Rainfall Regime in Catalonia. Chaos. July, 2020.
Selvam, Amujuri Mary. Self-Organized Criticality and Predictability in Atmospheric Flows: The Quantum World of Clouds and Rain. International: Springer, 2017.

B. A New CoCreation: A Singular Wumane Evolitionary Advance
Banzhaf, Wolfgang, et al, eds. Evolution in Action: Past, Present and Future. International: Springer, 2020.
Davies, Paul. Does New Physics Lurk Inside Living Matter? Physics Today. August 2020.
Packard, Norman, et al. Open-Ended Evolution and Open-Endedness. Artificial Life. 25/1, 2019.

1. Mind Over Matter and Energy: Quantum, Atomic, Chemical Connectomics
Atzori, Matteo and Roberta Sessoli. The Second Quantum Revolution: Challenges of Molecular Chemistry. Journal of the American Chemical Society. 141/29, 2019.
Ball, Philip. Coming Alive. Nature Materials. March, 2021.
Klishin, Andrei, et al. Statistical Physics of Design. New Journal of Physics. 20/103038, 2018.
Kumar, Nitesh, et al. Topological Quantum Materials from the Viewpoint of Chemistry. Chemical Reviews. 121/5, 2021.
Louie, Steven, et al. Discovering and Understanding Materials through Computation. Nature Materials. June, 2021.
Makey, Ghaith, et al. Universality of Dissipative Self-Assembly from Quantum Dots to Human Cells. Nature Physics. 16/7, 2020.
Norreys, Peter, et al. Prospects for High Gain Inertial Fusion Energy. Philosophical Transactions of the Royal Society A. October, 2020.
Ravoo, Bart. Frontiers of Molecular Self-Assembly. Israel Journal of Chemistry. 59/868, 2019.
Wasielewski, Michael, et al. Exploiting Chemsitry and Molecular Systems for Quantum Information Science. Nature Reviews Chemistry. 4/490, 2020.

2. Second Genesis: Emergent LifeKinder Proceeds to an Aware BioGenetic Phase
Davies, Jamie. Real-World Synthetic Biology. Life. 9/1, 2019.
De la Torre, Daniel and Jason Chin. Reprogramming the Genetic Code. Nature Reviews Genetics. 22/3, 2021.
Karalkar, Nilesh and Steven Benner. Synthetic Darwinism and the Aperiodic Crystal Structure. Current Opinion in Chemical Biology. 46/188, 2018.
Scalise, Dominic and Rebecca Shulman. Controlling Matter at the Molecular Scale with DNA Circuits. Annual Review of Biomedical Engineering. 21/469, 2019.
Scheufele, Dietram, et al. What We Know about Effective Public Engagement on CRISPR and Beyond. Proceedings of the National Academy of Sciences. 118/22, 2021.
Venetz, Jonathan, et al. Chemical Synthesis Rewriting of a Bacterial Genome to Achieve Design Flexibility and Biological Functionality. Proceedings of the National Academy of Science. 116/8070, 2019.
Vidiella, Blai, et al. Engineering Self-Organized Criticality in Living Cells. Nature Communications. 12/4415, 2021.

4. Sustainable Ecovillages: Social Protocells
Andersson, Claes and Petter Tornberg. Toward a Macroevolutionary Theory of Human Evolution: The Social Protocell. Biological Theory. Online December, 2018.
Bohm, Steffen, et al. Ecocultures: Blueprints for Sustainable Communities. London: Routledge, 2014.
Miller, Frederica. Ecovillages Around the World. Scotland: Findhorn Press, 2018.
Oppenheim, Claire. Nelson Mandela and the Power of Ubuntu. Religions. 3/2, 2012.
Rhoads, Daniel, et al. A Sustainable Strategy for Open Streets in (Post) Pandemic Cities. Communications Physics. 4/183, 2021.
We Over Me Farm. www.weovermefarm.com.
Wilson, David Sloan. This View of Life: Completing the Darwinian Revolution. New York: Pantheon, 2019.

5. A 2020 Complementary Genocracy: me + We = US
Bokanyi, Eszter, et al. Universal Scaling Laws in Metro Area Election Results. PLoS One. February 28, 2018.
Cosens, Barbara, et al. Governing Complexity: Integrating Science, Governance, and Law to Manage Accelerating Change in the Globalized Commons. Proceedings of the National Academy of Sciences. 118/36, 2021.
Cornell, Drucilla and Nyoko Muvanqua, eds. Ubuntu and the Law: African Ideals. New York: Fordham University Press, 2012.
Durante, Federica, et al. Ambivalent Stereotypes Link to Peace, Conflict, and Inequality across 38 Nations. Proceedings of the National Academy of Sciences. 114/669, 2017.
Fiske, Susan. Political Cognition Helps Explain Social Class Divides. Cognition. 188/108, 2019.
Galesic, Mirta and Daniel Stein. Statistical Physics Models of Belief Dynamics. arXiv:1706.02287.
Grossmann, Matt and David Hopkins. Asymmetric Politics: Ideological Republicans and Group Interest Democrats. New York: Oxford University, 2017.
Wiesner, Karoline, et al. Stability of Democracies: A Complex Systems Perspective. European Journal of Physics. 40/1, 2019.

6. A Viable Gaiasphere: Planetary Patriots and Matriots
Albrecht, Glenn. Earth Emotions. Ithaca: Cornell University Press, 2019.
Apostolopoulos, Yorghos, et al. Complex Systems and Population Health. Oxford: Oxford University Press, 2020.
Battro, Antonio, et al, eds. Children and Sustainable Development. International: Springer, 2017.
Kelbessa, Workineh. African Environmental Ethics. Environmental Ethics. 37/4, 2016.
Kothari, Ashish. A Tapestry of Alternatives. Scientific American. June 2021.
Lenton, Timothy, et al. Survival of the Systems. Trends in Ecology and Evolution./i January 2021,
Pradhan, Prajal, et al. The COVID-19 Pandemic Not only Poses Challenges, but also Opens Opportunities for Sustainable Development. Earth’s Future. July 2021.
Voda, Mihal, et al. Geosystems Pathways to the Future of Sustainability. Nature Scientific Reports. 9/14446, 2019.
Yeang, Ken. Saving the Planet by Design: Renewing Our World Through Ecomimesis. London: Routledge,, 2019.
Yuxin, Jia and Jia Xuelai. The Anthropocosmic Perspective on Intercultural Communication: Learning to be Global Citizens. Intercultural Communication Studies. 25/1, 2016.

C. An Earthropic Principle: Novel Evidence for a Special Planet
Frank, Adam, et al. Earth as a Hybrid Planet: The Anthropocene in an Evolutionary Astrobiological Context. Anthropocene. Online August, 2017.
Gribbin, John. Alone in the Milky Way. Scientific American. September, 2018.
Lingam, Manasvi and Abraham Loeb. Physical Constraints for the Evolution of Life on Exoplanets. arXiv:1810:02007.
Prantzos, Nikos. A Probabilistic Analysis of the Fermi Paradox in Terms of the Drake Formula. arXiv:2003.04802.
Secco, Luigi, et al. Habitability of Local, Galactic and Cosmological Scales. arXiv:1912:01569.