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A Sourcebook for the Worldwide Discovery of a Creative Organic Universe
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. Geo Sapience: 2000 - 2020 Select References

I. THE NATURAL GENESIS VISION

A. HOMO OPUS: HISTORIC PRESCIENCE

Ekeland, Ivar. The Best of All Possible Worlds: Mathematics and Destiny. Chicago: University of Chicago Press, 2006.

Kreps, David. Bergson, Complexity and Creative Emergence. London: Palgrave Macmillan, 2015.

Popov, Igor. Orthogenesis versus Darwinism. International: Springer, 2018.

Riskin, Jessica. The Restless Clock: A History of the Centuries-Long Argument over What Makes Living Things Tick. Chicago: University of Chicago Press, 2016.

Sarasohn, Lisa. The Natural Philosophy of Margaret Cavendish. Baltimore: Johns Hopkins University Press, 2010.

Stott, Rebecca. Darwin’s Ghosts: In Search of the First Evolutionists. New York: Spiegel and Grau, 2012.

Wagner, Roger and Andrew Briggs. The Penultimate Curiosity: How Science Swims in the Slipstream of Ultimate Questions. Oxford: Oxford University Press, 2016.

Young, George. The Russian Cosmists. Oxford: Oxford University Press, 2012.

B. ANTHROPO OPUS: A 21ST CENTURY PHENOMENAL REVOLUTION

Arthur, Wallace. Life through Time and Space. Cambridge: Harvard
University Press, 2017.

Auerswald, Philip. The Code Economy. A Forty-Thousand Year History. <New York: Oxford University Press, 2017.

Capra, Fritjof and Pier Luigi Luisi. The Systems View of Life: A Unifying Vision. Cambridge: Cambridge University Press, 2014.

Cockell, Charles. The Equations of Life: How Physics Shapes Evolution. New York: Basic Books, 2018.

Conway Morris, Simon. The Runes of Evolution: How the Universe Became Self-Aware. West Conshohocken, PA: Templeton Press, 2015.

Gissis, Snait, et al, ed. Landscapes of Collectivity in the Life Sciences. Cambridge: MIT Press, 2018.

Gordon, Natalie and Richard. Embryogenesis Explained. Singapore: World Scientific, 2016.

Gould, Roy. Universe in Creation: A New Understanding of the Big Bang and the Emergence of Life. Cambridge: Harvard University Press, 2018

Grinspoon, David. Earth in Human Hands: Shaping Our Planet's Future. New York: Grand Central Publishing, 2016.

Ismael, J. T. How Physics Makes Us Free. New York: Oxford University Press, 2016.

Smith, Eric and Harold Morowitz. The Origin and Nature of Life on Earth. Cambridge: Cambridge University Press, 2016.

Volk, Tyler. Quarks to Culture: How We Came to Be. New York: Columbia University Press, 2017.

Walker, Sara, et al, eds. From Matter to Life: Information and Causality. Cambridge: Cambridge University Press, 2017.

West, Geoffrey. Scale: The Universal Laws. <New York: Penguin, 2017.

Wilson, David Sloan. This View of Life: Completing the Darwinian Revolution. New York: Pantheon, 2019.

II. PLANETARY PRODIGY: AN EMERGENT SAPIENSPHERE LEARNS ON HER/HIS OWN

A. ABORIGINAL QUEST(ION)

1. INDIGENOUS INTIMATION: MYTHIC ANIMISM

Akomolafe, Adebayo. The Trees Still Speak: The Collective Intelligence of the Natural World. Spanda Journal. Volume 2, 2014.

Eglash, Ron and Audrey Bennett. Fractals in Global Africa. Critical Interventions. Issue 9/10, 2012.

Harvey, Graham, ed. The Handbook of Contemporary Animism. Durham, UK: Acumen Publishing, 2013.

Kohn, Eduardo. How Forests Think: Toward an Anthropology Beyond the Human. Berkeley: University of California Press, 2013.

Schipper, Mineke, et al. China’s Creation and Origin Myths. Leiden: Brill, 2011.

Witzel, Michael. The Origins of the World’s Mythologies. New York: Oxford University Press, 2013.

2. PERENNIAL WISDOME: AN ANTHROPOCOSMIC CODE

Chittick, William. Science of the Cosmos, Science of the Soul. Oxford, UK: Oneworld, 2007.

Gordon, Robin. Searching for the Soror Mystica: The Lives and Science of Women Alchemists. Lanham, MD: University Press of America, 2013.

Haberman, Jacob, ed. The Microcosm of Joseph Ibn Saddiq. Madison, NJ: Fairleigh Dickinson University Press, 2003.

Jackson, William. Heaven’s Fractal Net. Bloomington: University of Indiana Press, 2004

Panikkar, Raimon. The Rhythm of Being. Maryknoll, NY: Orbis Books, 2010.

Wang, Robin. Yinyang: The Way of Heaven and Earth in Chinese Thought and Culture. Cambridge: Cambridge University Press, 2012.

Weiming, Tu. An “Anthropocosmic” Perspective on Creativity. Procedia Social and Behavioral Sciences. 2/5, 2010.

3. THE BOOK OF NATURE

Botz-Bornstein, Thorsten. Genes, Memes, and the Chinese Concept of Wen. Philosophy East & West. 60/2, 2010.

Danielson, Dennis. Paradise Lost and the Cosmological Revolution. Cambridge: Cambridge University Press, 2015.

Dehaene, Stanislas. Reading in the Brain. New York: Viking, 2009

Nasr, Seyyed Hossein. The Garden of Truth. New York: HarperCollins, 2007.

Van Schaik, Carel and Kai Michel. The Good Book of Human Nature: An Evolutionary Reading of the Bible. New York: Basic Books, 2016.

Wheeler, Wendy. The Book of Nature. Saul, Nicholas and Simon James, eds. The Evolution of Literature. Amsterdam: Rodopi, 2011.

4. A ROSETTA COSMOS LITERACY

Baez, John and Mike Stay. Physics, Topology, Logic and Computation: A Rosetta Stone. Coecke, Bob, ed. New Structures in Physics. Berlin: Springer, 2011.

Bloch, William Goldbloom. The Unimaginable Mathematics of Borges’ Library. Oxford: Oxford University Press, 2008.

Burridge, James. Spatial Evolution of Human Dialects. Physical Review X. 7/031008, 2017.

De Looze, Laurence. The Letter and the Cosmos. Toronto: University of Toronto Press, 2016.

Esposti, Mirko, et al, eds. Creativity and Universality in Language. Switzerland: Springer International, 2016.

Kenna, Ralph, et al, eds. Maths Meets Myths: Quantitative Approaches to Ancient Narratives. International: Springer, 2017.

Massip-Bonet, Angels and Albert Bastardas-Boada, eds. Complexity Perspectives on Language, Communication and Society. Berlin: Springer, 2013.

Mufwene, Salikoko, et al. Complexity in Language: Developmental and Evolutionary Perspectives. Cambridge: Cambridge University Press, 2017.

Westling, Louise. The Logos of the Living World. New York: Fordham University Press, 2014.

5. WORLD PHILOSOPHY: AN UBUNTU UNIVERSE

Allott, Philip. Eutopia: New Philosophy and New Law for a Troubled World. Cheltenham, UK: Edward Elgar, 2016.

Bala, Arun, ed.. Asia, Europe, and the Emergence of Modern Science. New York: Palgrave Macmillan, 2012.

Elias, Amy and Christian Moraru, eds. The Planetary Turn: Relationality and Geoaesthetics in the Twenty-First Century. Evanston, IL: Northwestern University Press, 2015.

Ferry, Luc. A Brief History of Thought. New York: Harper Perennial, 2011.

Karenga, Maulana. MAAT: The Moral Ideal in Ancient Egypt: A Study in Classical African Ethics. New York: Routledge, 2004.

Nicholson, Daniel and John Dupre, eds. Everything Flows: Towards a Processual Philosophy of Biology. Oxford: Oxford University Press, 2018.

Verlardo, Valerio. Recursive Ontology: A Systemic Theory of Reality. Axiomathes. 26/1, 2016.

B. THE SPIRAL OF SCIENCE

Baaquie, Belal and Frederick Willeboordse. Exploring Integrated Science. Boca Raton: CRC Press, 2010.

Borner, Katy. Atlas of Science. Cambridge: MIT Press, 2010.

Dong, Yuxiao, et al. A Century of Science: Globalization of Scientific Collaborations, Citations, and Innovations. arXiv:1704.05150.

Fortunato, Santo, et al. Science of Science. Science. 359/1007, 2018.

Mitchell, Sandra. Unsimple Truths. Chicago: University of Chicago Press, 2009.

Neilsen, Michael. Reinventing Discovery: The New Era of Networked Science. Princeton: Princeton University Press, 2011.

Orrell, David. Truth or Beauty: Science and the Quest for Order. New Haven: Yale University Press, 2012.

Sun, Xiaoling, et al. Social Dynamics of Science. Nature Scientific Reports. 3/1069, 2013.

Zeng, An, et al. The Science of Science: From the Perspective of Complex Systems. Physics Reports. Online November, 2017.

1. EARTHIFICIAL INTELLIGENCE: DEEP NEURAL NETWORK LEARNING

Aggarwal, Charu. Neural Networks and Deep Learning. International: Springer, 2018.

Biamonte, Jacob, et al. Quantum Machine Learning. arXiv:1611.09347.

Goodfellow, Ian, et al, eds. Deep Learning. Cambridge: MIT Press, 2016.

Hassabis, Demis, et al. Neuroscience-Inspired Artificial Intelligence. Neuron. 95/2, 2017.

Mathuriya, Amrita, et al. CosmoFlow: Using Deep Learning to Learn the Universe at Scale. arXiv:1808.04728.

Schmidhuber, Jurgen. Deep Learning in Neural Networks: An Overview. Neural Networks. 61/2, 2015

Sejnowski, Terrence. The Deep Learning Revolution. Cambridge: MIT Press, 2018.

C. MINDKIND SAPIENSPHERE: WORLDWISE COLLECTIVE INTELLIGENCE

Chorost, Michael. World Wide Mind. New York: Free Press, 2011.

Downs, Roger. Coming of Age in the Geospatial Revolution. Human Development. 57/1, 2014.

Engel, David and Thomas Malone. Integrated Information as a Metric for Group Interaction. arXiv:1702.02462.

Falk, Emily and Danielle Bassett. Brain and Social Networks. Trends in Cognitive Sciences. 21/9, 2017.

Heylighen, Francis and Marta Lenartowicz. The Global Brain as a Model of the Future Information Society. Technological Forecasting and Social Change. 114/1, 2017.

Hillis, Ken, et al. Google and the Culture of Search. Abingdon, UK: Routledge, 2012.

Lenartowicz, Marta. Creatures of the Semiosphere. Technological Forecasting and Social Change. 114/1, 2017.

Noriega-Campero, Alejandro, et al. The Wisdom of the Network. arXiv:1805.04766.

Sloman, Steven and Philip Fernbach. The Knowledge Illusion: Why We Never Think Alone. New York: Riverhead Books, 2017.

Tetlow, Philip. The Web’s Awake. Hoboken, NJ: IEEE Press/Wiley Interscience, 2007.

III. AN ORGANIC, CONDUCIVE, HABITABLE MULTIUNIVERSE

A. Quantum Cosmology

Bojowald, Martin. Quantum Cosmology: A Review. Reports on Progress in Physics. 78/023901, 2015.

Chamcham, Khalil, et al, eds. The Philosophy of Cosmology. Cambridge: Cambridge University Press, 2017.

Javarone, Marco and Giuliano Armano. Quantum-Classical Transitions in Complex Networks. Journal of Statistical Mechanics. Online April, 2013.

Linde, Andrei. Inflationary Cosmology after Planck 2013. arXiv:1402.0526.

Palmer, Tim. New Perspectives on Geometry and Determinism in Fundamental Physics.
Contemporary Physics. Online April, 2014.

Smolin, Lee. Einstein’s Unfinished Revolution: the Search for What Lies Beyond the Quantum. New York: Penguin, 2019.

Tegmark, Max. Our Mathematical Universe. New York: Knopf, 2014.

Turok, Neil. The Universe Within: From Quantum to Cosmos. Toronto: House of Anansi Press, 2012

Wilczek, Frank. Physics in 100 Years. arXiv:1503.07735.

1. COSMOS: A GALACTIC, STELLAR, PLANETARY SPACESCAPE

Berlinski, Vladimir and Marc Henneaux. The Cosmological Singularity. Cambridge: Cambridge University Press, 2017.

Codello, Alessandro and Rajeev Kumar Jain. A Unified Evolution of the Universe. arXiv:1603.00028.

Cen, Renyue. Temporal Self-Organization in Galaxy Formation. Astrophysical Journal Letters. 785/L21, 2014.

Codis, Sandrine, et al. On the Connectivity of the Cosmic Web. arXiv:1803.11477.

Frebel, Anna. Searching for the Oldest Stars. Princeton: Princeton University Press, 2015.

Libeskind, Noam and Brent Tully. Our Place in the Cosmos. Scientific American. July, 2016.

Steinhardt, Charles and Josh Speagle. A Uniform History for Galaxy Evolution. arXiv:1409.2883.

Tyson, Neil de Grasse, et al. Welcome to the Universe: An Astrophysical Tour. Princeton: Princeton University Press, 2016.

2. QUANTUM ORGANICS IN THE 21ST CENTURY

Asano, Masanari, et al. Quantum Adaptivity in Biology: From Genetics to Cognition. Springer, 2015.

Ball, Philip. Beyond Weird: Why Everything You Thought You Knew about Quantum Physics Is Different. London: Bodley Head, 2018.

Bastidas, Victor, et al. Chimera States in Quantum Mechanics. arXiv:1807.08056.

Bianconi, Ginestra. Interdisciplinary and Physics Challenges of Network Theory. arXiv:1509.00345.

Burghardt, Irene and Andreas Buchleitner. Quantum Complex Systems. Annalen der Physik. 527/9-10, 2016.

Falkenburg, Brigitte and Margaret Morrison. Why More is Different: Philosophical Issues in Condensed Matter Physics and Complex Systems. Berlin: Springer, 2015.

Heyl, Markus. Dynamical Quantum Phase Transitions. Reports on Progress in Physics. 81/5, 2018.

Lombardi, Olimpia, et al, eds. Quantum Chaos and Complexity. Entropy. Online July, 2018

‘t Hooft, Gerard. The Cellular Automaton Interpretation of Quantum Mechanics. arXiv:1405.1548.

Torlai, Giacomo, et al. Neural Network Quantum State Tomography. Nature Physics. May, 2018.

Walleczek, Jan, et al, eds. Special Issue: Emergent Quantum Mechanics – David Bohm Centennial Perspectives. Entropy. 21/2, 2019.

3. SYSTEMS PHYSICS

Castellano, Claudino, et al. Statistical Physics of Social Dynamics. Reviews of Modern Physics. 81/2, 2009.

Costa, Luciano da Fontoura, et al. Analyzing and Modeling Real-World Phenomena with Complex Networks. Advances in Physics. 60/3, 2011.

Janson, Natalia. Non-Linear Dynamics of Biological Systems. Contemporary Physics. 53/2, 2012

Kibble, Tom and Ajit Srivastava. Condensed Matter Analogues of Cosmology. Journal of Physics: Condensed Matter. 25/400301, 2013.

Krioukov, Dmitri, et al. Network Cosmology. Nature Scientific Reports. 2/793, November, 2012.

Kwapien, Jaroslaw and Stanislaw Drozdz. Physical Approach to Complex Systems. Physics Reports. 515/3-4, 2012.

Scott, Alwyn. The Nonlinear Universe. Berlin: Springer, 2007.

Tkacik, Gasper, et al. Thermodynamics for a Network of Neurons: Signatures of Criticality. arXiv:1407.5946.

Yeung, Chi Ho and David Saad. Networking – A Statistical Physics Perspective. Journal of Physics A. 46/10, 2013.

4. NOVEL EXOUNIVERSE STUDIES

Adams, Fred C. The Degree of Fine-Tuning in Our Universe – and Others. arXiv:1902.03928.

Bouhmadi-Lopez, Mariam, et al. The Interacting Multiverse and its Effect on the Cosmic Microwave Background. arXiv:1809.09133.

Dai, Liang, et al. On Separate Universes. arXiv:1504.00351.

Gould, Elizabeth and Niayesh Afshordi. Does History Repeat Itself? Periodic Time Cosmology. arXiv:1903.09694.

Grohs, Evan, et al. Universes without the Weak Force. arXiv:1801.06081.

Linde, Andrei. A Brief History of the Multiverse. arXiv:1512.01203.

Rahvar, Sohrab. Cosmic Initial Conditions for a Habitable Universe. Monthly Notices of the Royal Astronomical Society. 470/3, 2017.

Rubenstein, Mary-Jane. Worlds Without End: The Many Lives of the Multiverse. New York: Columbia University Press, 2014.

Sandora, McCullen. Multiverse Predictions for Habitability: Fraction of Planets that Develop Life. arXiv:1903.06283.

Wilczek, Frank. Multiversality. Classical and Quantum Gravity. 30/193001, 2013.

B. AN ANIMATE NATURAL GENESIS ECOSMOS

Bains, William and Dirk Schulze-Makuch. The Cosmic Zoo: The (Near) Inevitability of the Evolution of Complex, Macroscopic Life. Life. 6/3, 2016.

Chen, Irene and Martin Nowak. From Prelife to Life: How Chemical Kinetics Become Evolutionary Dynamics. Accounts of Chemical Research. 45/12, 2012.

Egel, Richard. Life’s Order, Complexity, Organization, and Its Thermodynamic-Holistic Imperatives. Life. Online November, 2012.

Friston, Karl. Life as We Know It. Journal of the Royal Society Interface. 6/10, 2013.

Gordon, Richard and Alexei Sharov, eds. Habitability of the Universe before Earth. Amsterdam: Academic Press/Elsevier, 2017.

Lynn, David, et al. Origins of Chemical Evolution. Accounts of Chemical Research. 45/12, 2012.

Mann, Stephen. Systems of Creation: The Emergence of Life from Nonliving Matter. Accounts of Chemical Research. 45/12, 2012.

Meyer-Ortmanns, Hildegard and Stefan Thurner, eds. Principles of Evolution: From the Planck Epoch to Complex Multicellular Life. Berlin: Springer, 2011.

Pross, Addy. What is Life?: How Chemistry becomes Biology. New York: Oxford University Press, 2012.

Westall, Frances and Andre Brack. The Importance of Water for Life. Space Science Reviews. 214/2, 2018.

1. REUNION OF BIOLOGY AND PHYSICS: ACTIVE MATTER

Azaele, Sandro, et al. Statistical Mechanics of Ecological Systems. arXiv:1506.01721.

Bialek, William. Perspectives on Theory at the Interface of Physics and Biology. arXiv:1512.08954.

Cartwright, Julyan, et al. DNA as Information: At the Crossroads between Biology, Mathematics, Physics and Chemistry. Philosophical Transactions of the Royal Society A. Vol.374/Iss.2063, 2016.

Cavagna, Andrea and Irene Giardina. Bird Flocks as Condensed Matter Systems. Annual Review of Condensed Matter Physics. Volume 5, 2014.

Crosato, Emanuele, at al. Thermodynamics of Emergent Structure in Active Matter. arXiv:1812.08527.

Fodor, Etienne and Cristina Marchetti. The Statistical Physics of Active Matter. arXiv:1708.08652.

Goldenfeld, Nigel and Carl Woese. Life is Physics: Evolution as a Collective Phenomenon Far from Equilibrium. Annual Review of Condensed Matter Physics. Volume 2, 2011.

Katsnelson, Mikhail, et al. Towards Physical Principles of Biological Evolution. Physica Scripta. 93/4, 2018.

Lee, Chiu Fan and Jean David Wurtz. Novel Physics Arising From Phase Transitions in Biology. Journal of Physics D. 52/2, 2019.

McFadden, Johnjoe and Jim Al-Khalili. The Origins of Quantum Biology. Proceedings of the Royal Society A. Vol.474/Iss.2220, 2018.

Ramaswamy, Sriram. The Mechanics and Statistics of Active Matter. Annual Review of Condensed Matter Physics. 1/323, 2010.

2. SYSTEMS CHEMISTRY

Ashkenasy, Goren, et al. Systems Chemistry. Chemical Society Reviews. 46/2543, 2017.

Banzhaf, Wolfgang and Lidia Yamamoto. Artificial Chemistries. Cambridge: MIT Press, 2015.

Barge, Laura, et al. From Chemical Gardens to Chemobrionics. Chemical Reviews. 115/8652, 2015.

Doty, David and Shaopeng Zhu. Computational Complexity of Atomic Chemical Reaction Networks. arXiv:1702.05704.

Grzybowski, Bartosz, et al. From Dynamic Self-Assembly to Networked Chemical Systems. Chemical Society Reviews. 46/5647, 2017.

Lehn, Jean-Marie. Perspectives in Chemistry – Steps toward Complex Matter. Angewandte Chemie International Edition. 52/10, 2013.

Mikhailov, Alexander and Gerhard Ertl. Chemical Complexity: Self-Organization Processes in Molecular Systems. Switzerland: Springer Frontiers, 2017.

Ruiz-Mirazo, Kepa, et al. Prebiotic Systems Chemistry. Chemical Reviews. 114/1, 2014.

3. UNIVERSAL EVOLUTIONISM: AN ASTROBIOLOGICAL MILIEU

Baladron, Carlos and Andrei Khrennikov. Outline of a Unified Darwinian Evolutionary Theory for Physical and Biological Systems. Progress in Biophysics and Molecular Biology. Online May, 2017.

Campbell, John O. Universal Darwinism as a Process of Bayesian Inference. Frontiers in Systems Neuroscience. June 2016.

Cirkovic, Milan. The Astrobiological Landscape: Philosophical Foundations of the Study of Cosmic Life. Cambridge: Cambridge University Press, 2012.

Lewis, Samuel, et al. Darwin’s Aliens. International Journal of Astrobiology. Online November, 2017.

Yang, Xin-She.Nature-Inspired Optimization Algorithms. Amsterdam: Elsevier, 2014.

C. THE INFORMATION COMPUTATION TURN

Bawden, David and Lyn Robinson. “Waiting for Carnot:” Information and Complexity. Journal of the Association for Information Science and Technology. Online May, 2015.

Cartwright, Julyan and Alan Mackay. Beyond Crystals: The Dialectic of Materials and Information. Philosophical Transactions of the Royal Society. 370/2807, 2012.

Cooper, S. Barry and Jan van Leeuwen, eds. Alan Turing: His Work and Impact. Amsterdam: Elsevier, 2013.

Davies, Paul. The Demon in the Machine: How Hidden Webs of Information are Solving the Mystery of Life. London: Allen Lane, 2019.

Dyson, George. Turing’s Cathedral: The Origins of the Digital Universe. New York: Pantheon Books, 2012.

Ensslin, Torsten, et al. The Physics of Information. Annalen der Physik. 531/3, 2019.

Gleick, James. The Information: A History, A Theory, A Flood. New York: Pantheon, 2011.

Hidalgo, Cesar. Why Information Grows: The Evolution of Order, from Atoms to Economies. New York: Basic Books, 2015.

Mainzer, Klaus. The Digital and the Real Universe. Philosophies. 4/1, 2019.

Mora, Thierry, et al. Special Issue on Information Processing in Living Systems. Journal of Statistical Physics. 162/5, 2017.

Zenil, Hector, ed. A Computable Universe: Understanding and Exploring Nature as Computation. Singapore: World Scientific, 2012.

1. QUANTUM PARTICIPATORY (QBism) INFORMATION

Aguirre, Anthony, et al, eds. It From Bit or Bit From It?: On Physics and Information. Berlin: Springer, 2015.

Asano, Masanari, et al. Quantum Information Biology arXiv:1503.02515.

Benioff, Paul. Relation between Observers and Effects of Number Valuation in Science. arXiv:1804.04633.

Chiribella, Giulio and Robert Spekkens, eds. Quantum Theory: Information Foundations and Foils. Dordrecht: Springer, 2015.

D’Ariano, Giacomo, et al. Quantum Theory from First Principles: An Informational Approach. Cambridge: Cambridge University Press, 2017.

Fuchs, Christopher and Blake Stacey. QBism: Quantum Theory as a Hero’s Handbook. arXiv:1612.07308.

Lombardi, Olimpia, et al, eds. What is Quantum Information? Cambridge: Cambridge University Press, 2017.

Mermin, David. Making Better Sense of Quantum Mechanics. Reports on Progress in Physics. 82/1, 2018.

Timpson, Christopher. Quantum Information Theory. Oxford: Clarendon, 2013.

Vedral, Vlatko. Decoding Reality: The Universe as Quantum Information. Oxford: Oxford University Press, 2010.

Von Baeyer, Hans. QBism: The Future of Quantum Physics. Cambridge: Harvard University Press, 2016.

D. AN INTRINSIC CONSCIOUSNESS AND INTELLIGENCE

Braun, Claude and Shaun Lovejoy. The Biology of Consciousness from the Bottom Up. Adaptive Behavior. 126/3, 2018.

Bruntrup, Godehard and Ludwig Jaskolla, eds. Panpsychism: Contemporary Perspectives. Oxford: Oxford University Press, 2017.

Feinberg, Todd and Jon Mallatt. The Ancient Origins of Consciousness. Cambridge: MIT Press, 2016.

Gazzaniga, Michael. The Consciousness Instinct. New York: Farrar, Straus and Giroux, 2018.

Guevara Erra, Ramon, et al. Statistical Mechanics of Consciousness. Physical Review E. 94/052402, 2016.

Koch, Christof. Consciousness: Confessions of a Romantic Reductionist. Cambridge: MIT Press, 2012.

Linde, Andrei. Universe, Life, Consciousness. www.andrei-linde.com/articles/universe-life-consciousness-pdf.

Tononi, Giulio. Phi: A Voyage from the Brain to the Soul. New York: Pantheon, 2012.

E. A THERMODYNAMICS OF LIFE

Cartwright, Jon. Roll Over, Boltzman. Physics World. May, 2014.

Dewar, Roderick, et al, eds. Beyond the Second Law: Entropy Production and Non-equilibrium Systems. Berlin: Springer, 2013.

England, Jeremy. Dissipative Adaptation in Driven Self-Assembly. Nature Nanotechnology. 10/11, 2015.

Kaneko, Kunihiko and Chikara Furesawa. Macroscopic Theory for Evolving Biological Systems Akin to Thermodynamics. Annual Review of Biophysics. 47/273, 2018.

Kleidon, Axel. Thermodynamic Foundations of the Earth System. Cambridge: Cambridge University Press, 2016.

Marletto, Chiara. Constructor Theory of Thermodynamics. arXiv:1608.02625.

Rajpurohit, Tanmay and Wassim Haddad. Stochastic Thermodynamics: A Dynamical Systems Approach. Entropy. Online December, 2017.

1. QUANTUM THERMODYNAMICS

Alicki, Robert and Ronnie Kosloff. Introduction to Quantum Thermodynamics: History and Prospects. arXiv:1801.08314.

Anders, Janet and Massimiliano Esposito. Focus on Quantum Thermodynamics. New Journal of Physics. 19/010201, 2017.

Faist, Philippe. Quantum Coarse Graining: An Information-Theoretic Approach to Thermodynamics. arXiv:1607.03104.

Gemmer, Jochen, et al. Quantum Thermodynamics. Berlin: Springer, 2012.

Vedral, Vlatko. Law and Disorder. New Scientist. April 7, 2018.

Wolchover, Natalie. The Quantum Thermodynamics Revolution. Quanta Magazine. Online May 2, 2017.

2. AN AUTOCATALYTIC COSMOS

Bissette, Andrew and Stephen Fletcher. Mechanisms of Autocatalysis. Angewandte Chemie International Edition. 52/12800, 2013.

Farnsworth, Keith, et al. Unifying Concepts of Biological Function from Molecules to Ecosystems. Oikos. 126/10, 2017.

Hordijk, Wim and Mike Steel. The Emergence of Autocatalytic Networks. Biosystems. 152/1, 2017.

Lancet, Doron. Systems Protobiology: Origin of Life by Mutually Catalytic Networks. Life. Online July, 2018.

Piotto, Stefano, et al. Plausible Emergence of Autocatalytic Cycles under Prebiotic Conditions. Life. Online April 4, 2019.

Witzany, Guenther. Crucial Steps to Life: From Chemical Reactions to Code Using Agents. BioSystems. Online December, 2015.

F. SYSTEMS COSMOLOGY: FRACTAL SPACE-TIME-MATTER

Aschwanden, Markus. Self-Organized Criticality in Astrophysics: The Statistics of Nonlinear Processes in the Universe. Berlin: Springer, 2011.

Coutinho, Bruno, et al. The Network behind the Cosmic Web. arXiv:1604.03236.

Doering, Andreas and Tim Palmer. New Geometric Concepts in the Foundations of Physics. Philosophical Transactions of the Royal Society A. 373/Issue 2047, 2015.

Ferreira, Pedro, et al. Inflation in a Scale Invariant Universe. arXiv:1802.06069.

Krioukov, Dmitri, et al. Network Cosmology. Nature Scientific Reports. 2/793, 2012.

Lapidus, Michel. An Overview of Complex Fractal Dimensions. arXiv:1803.10399.

Watkins, Nicholas, et al. 25 Years of Self-Organized Criticality. Space Science Reviews. 198/1, 2016.

G. ANTHROPIC, BIOTROPIC, ECOTROPIC, EARTHROPIC PRINCIPLES

Barrow, John, et al, eds. Fitness of the Cosmos for Life: Biochemistry and Fine-Tuning. Cambridge: Cambridge University Press, 2007.

Conway Morris, Simon. What is Written into Creation? Burrell, David, et al, eds. Creation and the God of Abraham. Cambridge: Cambridge University Press, 2010.

Holder, Rodney and Simon Mitton, eds. Georges Lemaitre: Life, Science and Legacy. Berlin: Springer, 2013.

Lewis, Geraint and Luke Barnes. A Fortunate Universe: Life in a Finely Tuned Cosmos. Cambridge: Cambridge University Press, 2016.

Livio, Mario and Martin Rees. Fine-Tuning, Complexity, and Life in the Multiverse. arXiv:1801.06944.

Naumann, Thomas. Do We Live in the Best of All Worlds? The Fine-Tuning of the Constants of Nature. Universe. Online August, 2017.

H. AN ASTROCHEMISTRY TO ASTROBIOLOGY FERTILITY

Chela-Flores, Julian. From Systems Chemistry to Systems Astrobiology: Life in the Universe as an Emergent Phenomenon. International Journal of Astrobiology. Online July, 2012.

Cirkovic, Milan. The Astrobiological Landscape: Philosophical Foundations of the Study of Cosmic Life. Cambridge: Cambridge University Press, 2012.

Domagal-Goldman, Shawn and Katherine Wright, eds.. The Astrobiology Primer 2.0. Astrobiology. 16/8, 2016.

Fortenberry, Ryan. Quantum Astrochemical Spectroscopy. International Journal of Quantum Chemistry. 117/2, 2017.

Kolb, Vera, ed. Handbook of Astrobiology. Boca Raton: CRC Press, 2019.

McGuire, Brett. 2018 Census of Interstellar, Circumstellar, Extragalactic, Protoplanetary Disk, and Exoplanetary Molecules. arXiv:1809.09132.

Smith, Ian, et al, eds. Astrochemistry and Astrobiology. Berlin: Springer, 2013.

Van Dishoeck, Ewine. Astrochemistry: Overview and Challenges. arXiv:1710.05940.

I. EXOEARTHS EVERYWHERE: A COSMIC CENSUS

Aschwanden, Markus and Felix Scholkmann. Exoplanet Predictions Based on Harmonic Orbit. arXiv:1705.07138.

Behroozi, Peter and Molly Peeples. On the History and Future of Cosmic Planet Formation. arXiv:1508.01202.

Borucki, William. KEPLER Mission: Development and Overview. Reports on Progress in Physics. 79/3, 2016.

Boss, Alan. Universal Life. New York: Oxford University Press, 2019.

Gargaud, Muriel, et al. Habitability in the Universe from the Early Earth to Exoplanets. Origins of Life and Evolution of Biospheres. 46/4, 2016.

Kaltenegger, Lisa. How to Characterize Habitable Worlds and Signs of Life. Annual Review of Astronomy and Astrophysics. 55/433, 2017.

Perryman, Michael. The Exoplanet Handbook. Cambridge: Cambridge University Press, 2018.

Ramirez, Ramses. A More Comprehensive Habitable Zone for Finding Life on Other Planets. Geosciences. Online July, 2018.

Tremaine, Scott. The Statistical Mechanics of Planet Orbits. arXiv:1504.01160.

Walker, Sara, et al. Exoplanet Biosignatures: Future Directions. arXiv:1705.08071.

IV. COSMOMICS: A GENOMIC SOURCE CODE IS IN PROCREATIVE EFFECT

Bornholdt, Stefan and Stuart Kauffman. Revisiting the Statistical Mechanics Perspective on Cellular Regulation. arXiv:1902.00483.

Coveney, Peter, et al. Bridging the Gaps at the Physics-Chemistry-Biology Interface. Philosophical Transactions of the Royal Society A. Vol. 374/Iss. 2080, 2016.

Feistel, Rainer and Werner Ebeling. Physics of Self-Organization and Evolution. Weinheim: Wiley-VCH, 2011.

Frame, Michael and Amelia Urry. Fractal Worlds: Grown, Built, and Imagined. New Haven: Yale University Press, 2016.

Holovatch, Yurij, et al. Complex Systems: Physics beyond Physics. European Journal of Physics. 38/023002, 2017.

Lesne, Annick and Michel Lagues. Scale Invariance. Germany: Springer, 2012.

Lin, Yi, et al. Systems Science. Boca Raton: CRC Press, 2012.

Ma’ayan, Avi. Complex Systems Biology. Journal of the Royal Society Interface. Vol. 14/Iss. 134, 2017.

Mero, Laszlo. The Logic of Miracles. New Haven: Yale University Press, 2018.

Meyers, Robert, ed., 2nd edition. Encyclopedia of Complexity and Systems Science. Berlin: Springer, 2020.

Mitchell, Melanie. Complexity: A Guided Tour. Oxford: Oxford University Press, 2009.

Munoz, Miguel. Colloquium: Criticality and Dynamical Scaling in Living Systems. arXiv:1712.04499.

Rosas, Fernando, et al. An Information-Theoretic Approach to Self-Organization. arXiv:1808.05602.

Thurner, Stefan, et al. Introduction to the Theory of Complex Systems. Oxford: Oxford University Press, 2018.

A. BITERACY: NATURAL (Genetic) ALGORIHTMS

Brabazon, Anthony, et al. Natural Computing Algorithms. Berlin: Springer, 2015.

Condon, Anne, et al. Will Biologists Become Computer Scientists? EMBO Reports. 19/9, 2018.

De Castro, Leandro Nunes. Fundamentals of Natural Computing. Boca Raton: Chapman & Hall/CRC, 2006.

Domingos, Pedro. The Master Algorithm. New York: Basic Books, 2015.

Erwig, Martin. Once Upon an Algorithm: How Stories Explain Computing. Cambridge: MIT Press, 2017.

Mayfield, John. The Engine of Complexity: Evolution as Computation. New York: Columbia University Press, 2013.

Sommaruga, Giovanni and Thomas Strahm, eds. Turing’s Revolution. Switzerland: Birkhauser, 2015.

Stepney, Susan, et al, eds. Computational Matter. International: Springer, 2018.

Valiant, Leslie. Nature's Algorithms for Learning and Prospering in a Complex World. New York: Basic Books, 2013.

Xu, Lei. Bayesian Ying-Yang Harmony Learning. Applied Informatics. Online June, 2016.

B. UNIVERSALITY AFFIRMATIONS: A CRITICAL COMPLEMENTARITYy

Bala, Arun. Complementarity beyond Physics. Basingstoke, UK: Palgrave Macmillan, 2017.

Chialvo, Dante. Life at the Edge: Complexity and Criticality in Biological Function. arXiv:1810.11737.

Zarepour, Mahdi, et al. Universal and Non-Universal Neural Dynamics on Small World Connectomes. arXiv:1905.05280.

Daniels, Bryan, et al. Criticality Distinguishes the Ensemble of Biological Regulatory Networks. Physical Review Letters. Online September, 2018.

Hidalgo, Jorge, et al. Cooperation, Competition and the Emergence of Criticality in Communities of Adaptive Systems. Journal of Statistical Mechanics. March/033203, 2016.

Kim, Hyunju, et al. Universal Scaling Across Biochemical Networks of Earth. Science Advances. 5/eaau0149, 2019.

Roli, Andrea, et al. Dynamical Criticality. Journal of Systems Science and Complexity. 31/3, 2018.

Tadic, Bosiljka. Self-Organized Criticality and Emergent Hyperbolic Networks. European Journal of Physics. 40/2, 2019.

Wilting, Jens and Viola Priesemann. 25 Years of Criticality in Neuroscience. arXiv:1903.05129.

C. NETWORK: A COSMIC CONNECTOME

Albert, Reka and Albert-Laszlo Barabasi. Statistical Mechanics of Complex Networks. Reviews of Modern Physics. 74/1, 2002.

Aleta, Alberto and Yamir Moreno. Multllayer Networks in a Nutshell. Annual Review of Condensed Matter Physics. 10, 2019.

Biamonte, Jacob, et al. Complex Networks: From Classical to Quantum. arXiv:1702.08459.

Bianconi, Ginestra. Multilayer Networks: Structure and Function. Oxford: Oxford University Press, 2018.

Cimini, Giulio, et al. The Statistical Physics of Real-World Networks. arXiv:1810.05095.

Holse, Petter. Modern Temporal Network Theory. European Physical Journal B. 88/9, 2016.

Mariani, Manuel, et al. Nestedness in Complex Networks: Observation, Emergence, and Implications. Physics Reports. Volume 813, 2019

Newman, Mark. Networks: An Introduction. New York: Oxford University Press, 2018.

Vespignani, Alessandro. Twenty Years of Network Science. Nature. 558/528, 2018.

V. SYSTEMS EVOLUTION: A 21st CENTURY GENESIS SYNTHESIS

Agrawal, Anurag. Toward a Predictive Framework for Convergent Evolution. American Naturalist. 190/S1, 2017.

Bateson, Patrick, et al. New Trends in Evolutionary Biology. Interface Focus. 7/5, 2017.

Bonduriansky, Russell and Troy Day. Extended Heredity: A New Understanding of Inheritance and Evolution. Princeton: Princeton University Press, 2018.

Calcott, Brett and Kim Sterelny, ed. The Major Transitions in Evolution Revisited. Cambridge: MIT Press, 2011.

Davies, Jamie. Life Unfolding: How the Human Body Creates Itself. Oxford: Oxford University Press, 2014.

de Vladar, Harold, et al. Grand Views of Evolution. Trends in Ecology and Evolution. 32/5, 2017.

Held, Lewis. Deep Homology?: Uncanny Similarities of Humans and Flies Uncovered by Evo-Devo. Cambridge: Cambridge University Press, 2017.

Jain, Kavita and Luca Peliti. Special Issue on a Statistical Theory of Biological Evolution. Journal of Statistical Physics. 172/1, 2018.

Laland, Kevin, et al. The Extended Evolutionary Synthesis. Proceedings of the Royal Society B. Vol. 282/Iss. 1813, 2015.

McGhee, George. Convergent Evolution. Cambridge: MIT Press, 2011.

Moczek, Armin, et al. The Significance and Scope of Evolutionary Developmental Biology. Evolution & Development. 17/3, 2015.

Ostachuk, Agustin. What is It Like to be a Crab? A Complex Network Analysis of Eucaridan Evolution. Evolutionary Biology. Online May 2019.

Orgogozo, Virginie. Replaying the Tape of Life in the Twenty-First Century. Interface Focus. 5/20150057, 2015.

Shapiro, James. Evolution: A View from the 21st Century. Upper Saddle River, NJ: FT Press Science, 2011.

Szathmary, Eors. Toward Major Evolutionary Transition Theory 2.0. Proceedings of the National Academy of Sciences. 112/10104, 2015.

Wagner, Andreas. Arrival of the Fittest. New York: Current/Penguin, 2014.

A. SYSTEMS NETWORK BIOLOGY AND GENETICS

Alvarez-Buylla, Elena, et al. Systems Biology Approaches to Development beyond Bioinformatics. BioScience. 66/5, 2016.

Cavagna, Andrea, et al. Physical Constraints in Biological Collective Behavior. Current Opinion in Systems Biology. 9/49, 2018.

Davidson, Eric. Evolutionary Bioscience as Regulatory Systems Biology. Developmental Biology. 357/1, 2011.

Geontoro, Lea. Cross-Hierarchy Systems Principles. Current Opinion in Systems Biology. 1/80, 2017.

Kutschera, Ulrich. Systems Biology of Eukaryotic Superorganisms and the Holobiont Concept. Theory in Biosciences. Online June, 2018

O’Malley, Maureen, et al. A Philosophical Perspective on Evolutionary Systems Biology. Biological Theory. 10/1, 2015.

Radde, Nicole and Marc-Thorsten Hutt. The Physics behind Systems Biology. EPJ Nonlinear Biomedical Physics. Online August, 2016.

Soyer, Orkun, ed. Evolutionary Systems Biology. Berlin: Springer, 2012.

B. EVOINFORMATICS: A BIOSEMIOTIC QUALITY

Barbieri, Marcello. Code Biology, Peircean Biosemiotics, and Rosen’s Relational Biology. Biological Theory. 14/1, 2019.

Barbieri, Marcello, ed. The Codes of Life. Berlin: Springer, 2008.

Deacon, Terrence. Reconsidering Darwin’s “Several Powers.”. Biosemiotics. Online March, 2016.

Emmeche, Claus and Kalevi Kull, eds. Towards a Semiotic Biology: Life is the Action of Signs. London: Imperial College Press, 2011

Hoffmeyer, Jesper. The Semiome: From Genetic to Semiotic Scaffolding. Semiotica. 198/11, 2014.

Hofmeyr, Jan-Hendrik. The First Special Issue on Code Biology. BioSystems. 164/11, 2018.

Pattee, Howard and Joanna Raczaszek-Leonardi. Laws, Language and Life. Berlin: Springer, 2012.

Velmezova, Ekaterina, et al, eds. Biosemiotic Perspectives on Language and Linguistics.International: Springer, 2015.

Wheeler, Wendy. Expecting the Earth: Life/Culture/Biosemiotics. London: Lawrence & Wishart, 2016.

C. AN EVOLUTIONARY INTELLIGENCE

Chaistain, Erick, at al. Algorithms, Games, and Evolution. Proceedings of the National Academy of Sciences. 111/10620, 2014.

de Vladar, Harold and Eors Szathmary. Neuronal Boost to Evolutionary Dynamics. Interface Focus. 5/6, 2015.

Hochberg, Michael, et al.Innovation: An Emerging Focus from Cells to Societies. Philosophical Transactions of the Royal Society B. Vol. 372/Iss. 1736, 2017.

Kouvaris, Kostas, et al. How Evolution Learns to Generalize. arXiv:1508.06854.

Oudeyer, Pierre-Yves and Linda Smith. How Evolution May Work Through Curiosity-Driven Development Process. Topics in Cognitive Science. 8/2, 2016.

Watson, Richard and Eors Szathmary. How Can Evolution Learn? Trends in Ecology & Evolution. 31/2, 2016.

Watson, Richard, et al. Evolutionary Connectionism. Evolutionary Biology. Online December, 2015.

VI. EARTH LIFE EMERGENCE: DEVELOPMENT OF BODY, BRAIN, SELVES AND SOCIETIES

A. A SURVEY OF COMMON PRINCIPLES

Banavar, Jayanth, et al. Form, Function, and Evolution of Living Organisms. Proceedings of the National Academy of Sciences. 111/3332, 2014.

Caetano-Anolles, Derek, et al. Evolution of Macromolecular Structure. arXiv:1805.06487.

Coen, Enrico. Cells to Civilizations Princeton: Princeton University Press, 2012.

Earnest, Tyler, et al. Simulating Biological Processes: Stochastic Physics from Whole Cells to Colonies. Reports on Progress in Physics. 81/5, 2018.

Frank, Steven. The Invariances of Power Law Distributions. arXiv:1604.04883.

Frey, Erwin, et al. Protein Pattern Formation. arXiv:1801.01365.

Kelso, Scott and David Engstrom. The Complementary Nature. Cambridge: MIT Press, 2006.

Norris, Vic. What Properties of Life Are Universal? Origins of Life and Evolution of Biospheres. Online March, 2015.

Ramstead, Maxwell, et al. Answering Shrodinger’s Question: A Free-Energy Formulation. Physics of Life Reviews. Online September, 2017.

Tao, Terence. E pluribus unum: From Complexity, Universality. Daedalus. 141/3, 2012.

B. A NESTED GESTATION OF COMMUNAL CREATURES

1. GEOSPHERE AND ATMOSPHERE

Bickford, Marion, ed. The Web of Geological Sciences. Geological Society of America: Boulder, CO, 2013.

Fallah, Bijan, et al. Emergence of Global Scaling Behaviour in the Coupled Earth-Atmosphere Interaction. Nature Scientific Reports. 6/34005, 2016.

Goehring, Lucas. Pattern Formation in the Geosciences. Philosophical Transactions of the Royal Society A. 371/20120352, 2013.

Hazen, Robert, at al. Mineral Evolution. American Mineralogist. 93/1693, 2008.

Hunt, Allan and Stefano Manzoni.Networks on Networks: The Physics of Geobiology and Geochemistry.< Online: Morgan & Claypool Publishers, 2015.

Phillips, Colin and Douglas Jerolmack. Self-Organization of River Channels. Science.> 352/694, 2016.

Tsonis, Anastasios and James Elsner, eds. Nonlinear Dynamics in Geosciences. Berlin: Springer, 2007.

2. THE ORIGINS OF LIFE

Barge, Laura, et al. Thermodynamics, Disequilibrium, Evolution. Origins of Life and Evolution of Biospheres. Online June, 2016.

Cronin, Leroy and Sara Imari Walker. Beyond Prebiotic Chemistry. Science. 352/1174, 2016.

Deamer, David. First Life: Discovering the Connections between Stars, Cells, and How Life Began. Berkeley: University of California Press, 2011.

Egel, Richard. Origins and Emergent Evolution of Life. Origins of Life and Evolution of Biospheres. Online September, 2014.

Goldenfeld, Nigel, et al. Universal Biology and the Statistical Mechanics of Early Life. Philosophical Transactions of the Royal Society A. Vol. 375/Iss. 2109, 2017.

McFarland, Ben. A World From Dust: How the Periodic Table Shaped Life. New York: Oxford University Press, 2016.

Menor-Salvan, Cesar. ed. Prebiotic Chemistry and Chemical Evolution of Nucleic Acids. International: Springer, 2018.

Ruelle, David. The Origin of Life Seen From the Point of View of Non-Equilibrium Statistical Mechanics. arXiv:1701.08388.

Walker, Sara Imari and Cole Mathis. Network Theory in Prebiotic Evolution. Menor-Salvan, Cesar, ed. Prebiotic Chemistry and Chemical Evolution of Nucleic Acids. International: Springer, 2018.

3. MICROBIAL COLONIES

Allen, Rosalind and Bartlomiej Waclaw. Bacterial Growth: A Statistical Physicist’s Guide. Reports on Progress in Physics. 82/1, 2018.

Ben Jacob, Eshel. Social Behavior of Bacteria: From Physics to Complex Organization. European Physical Journal B. 65/3, 2008.
Cunha, Danilo, et al.Bacterial Colonies as Complex Adaptive Systems. Natural Computing. Online June, 2018.

Hahn, Aria, et al. The Information Science of Microbial Ecology. Current Opinion in Microbiology. 31/209, 2016.

Hussa, Elizabeth and Heidi Goodrich-Blair. It Takes a Village: Ecological and Fitness Impacts of Multipartite Mutualism. Annual Review of Microbiology. 67/161, 2013.

Lan, Ganhui and Yuhai Tu. Information Processing in Bacteria: Memory, Computation, and Statistical Physics. Reports on Progress in Physics. 79/5, 2016.

Sapp, Jan. The New Foundations of Evolution. Oxford: Oxford University Press, 2009.

4. CELLULAR HOLOBIONT SYMBIOSIS

Archibald, John. One Plus One Equals One: Symbiosis and the Evolution of Complex Life. Oxford: Oxford University Press, 2014.

Bordenstein, Seth and Kevin Theis. Host Biology in Light of the Microbiome. PLoS Biology. Online August, 2015.

Dietert, Rodney. The Human Superorganism. New York: Dutton, 2016.

Dehmelt, Leif and Philippe Bastiaens. Self-Organization in Cells. Meyer-Ortmanns, Hildegard and Stefan Thurner, eds. Principles of Evolution. Berlin: Springer, 2011.

Estrela, Sylvie, et al. Transitions in Individuality through Symbiosis. Current Opinion in Microbiology. 31/191, 2016.

Gilbert, Scott and Alfred Tauber. Rethinking Individuality: The Dialectics of the Holobiont. Biology & Philosophy. Online October, 2016.

Gontier, Nathalie, ed. Reticulate Evolution. Berlin: Springer, 2015.

O'Malley, Maureen. From Endosymbiosis to Holobionts. Journal of Theoretical Biology. Online March, 2017.

Sapp, Jan. The Symbiotic Self. Evolutionary Biology. Online March, 2016.

Yong, Ed. I Contain Multitudes: The Microbes Within Us and a Grander View of Life. New York: Ecco Books, 2016.

5. MULTICELLULAR FAUNA AND FLORA ORGANISMS

Arnellos, Argyris, et al. Organizational Requirements for Multicellular Autonomy. Biology and Philosophy. 29/6, 2014.

Brusalte, Stephen and Zhe-Xi Luo. Ascent of the Mammals. Scientific American. May, 2016.

Fisher, Roberta, et al. Group Formation, Relatedness, and the Evolution of Multicellularity. Current Biology. Online June, 2013.

Halatek, Jacob, et al. Self-Organization Principles of Intracellular Pattern Formation. Philosophical Transactions of the Royal Society B. Vol.373/Iss.1747, 2018.

Kapheim, Karen, et al. Genomic Signatures of Evolutionary Transitions from Solitary to Group Living. Science. 348/1139, 2015.

Libby, Eric and Paul Rainey. A Conceptual Framework for the Evolutionary Origins of Multicellularity. Physical Biology. 10/3, 2013.

Newman, Stuart, et al. The Vertebrate Limb: An Evolving Complex of Self-Organizing Systems. Progress in Biophysics and Molecular Biology. 137/12, 2018.

Ruiz-Trillo, Inaki and Aurora Nedelcu, eds. Evolutionary Transitions to Multicellular Life. Berlin: Springer, 2015.

Van Gestel, Jordi and Corina Tarnita. On the Origin of Biological Construction, with a Focus on Multicellularity. Proceedings of the National Academy of Sciences. 114/11018, 2017.

6. COOPERATIVE SOCIETIES

Bahar, Sonja. The Essential Tension: Cooperation and Competition in Biological Evolution. Switzerland: Springer Frontiers, 2017.

Bourke, Andrew F. G. Principles of Social Evolution. Oxford: Oxford University Press, 2011.

Cavagna, Andrea, et al. The Physics of Flocking. Physics Reports. Online December, 2017.

Couzin, Iain and Simon Levin, eds. Collective Behavior in Biological Systems. Journal of Statistical Physics. 158/3, 2015.

Dunbar, Robin, et al. Primate Social Group Sizes Exhibit a Regular Scaling Pattern. Biology Letters. 14/1, 2018.

Finn, Kelly, et al. Novel Insights into Animal Sociality from Multilayer Networks. arXiv:1712.01790.

Hofmann, Hans, et al. New Frontiers in the Integrative Study of Animal Behavior. Integrative and Comparative Biology. 56/6, 2016.

Kappeler, Peter, et al. Social Complexity: Patterns, Processes, and Evolution. Behavioral Ecology and Sociobiology. 73/1, 2019.

Reina, Andreagiovanni, et al. Psychophysical Laws and the Superorganism. Nature Scientific Reports. 8/4387, 2018.

Sterelny, Kim, et al, eds. Cooperation and Its Evolution. Cambridge: MIT Press, 2013.

7. DYNAMIC ECOSYSTEMS

Allen, Timothy and Thomas Hoekstra. Toward a Unified Ecology. New York: Columbia University Press, 2015.

Cumming, Graeme. Spatial Resilience in Social-Ecological Systems. Berlin: Springer, 2011.

Farnsworth, Keith, et al. Unifying Concepts of Biological Function from Molecules to Ecosystems. Oikos. 126/10, 2017.

Hagstrom, George and Simon Levin. Marine Ecosystems as Complex Adaptive Systems. Ecosystems. Online February, 2017.

Linquist, Stefan, et al. Yes! There are Resilient Generalizations (“Laws”) in Ecology. Quarterly Review of Biology. 91/2, 2016.

Meron, Ehud. Nonlinear Physics of Ecosystems. Boca Raton: CRC Press, 2015.

Nordbotten, Jan, et al. Ecological and Evolutionary Dynamics of Interconnectedness and Modularity. Proceedings of the National Academy of Sciences. 115/750, 2018.

Peters, Debra, et al. An Integrated View of Complex Landscapes. BioScience. 68/9, 2018.

Shade, Ashley, et al. Macroecology to Unite All Life, Large and Small. Trends in Ecology & Evolution. Online September, 2018

Tarnita, Corina, et al. A Theoretical Foundation for Multi-Scale Regular Vegetation Patterns. Nature. 541/398, 2017.

Wimberley, Edward. Nested Ecology: The Place of Humans in the Ecological Hierarchy. Baltimore: Johns Hopkins University Press, 2009.

8. MULTIPLE ANCESTRIES OF HOMO SAPIENS

Boughner, Julia, and Campbell Rolian, eds. Developmental Approaches to Human Evolution. Hoboken, NJ: Wiley-Blackwell, 2016.

Buskes, Chris. The Encultured Primate: Thresholds and Transitions in Hominin Cultural Evolution. Philosophies. 4/1, 2019.

Dunbar, Robin. Human Evolution: Our Brains and Behavior. Oxford: Oxford University Press, 2016.

Gamble, Clive. Settling the Earth: The Archaeology of Deep Human History. Cambridge: Cambridge University Press, 2013.

Hoffecker, John. The Information Animal and the Super-Brain.Journal of Archaeological Method and Theory. 20/1, 2013.

Laland, Kevin. The Cultural Animal. Scientific American. September, 2018.

Maslin, Mark. The Cradle of Humanity: How the Changing Landscape of Africa Made Us So Smart. Oxford: Oxford University Press, 2017.

Migliano, Andrea, et al. Characterization of Hunter-Gather Networks and Implications for Cumulative Culture
.
Nature Human Behavior. 1/0043, 2017.

Parmigiani, Stefano, et al. What Made Us Human? Biological and Cultural Evolution of Homo sapiens. Journal of Anthropological Sciences. Vol. 94, 2016.

Tibayrenc, Michel and Francisco Ayala, eds. On Human Nature: Biology, Psychology, Ethics, Politics, and Religion. Cambridge, MA: Academic Press, 2016.

9. A LIVING GAIAN BIO-ECOSPHERE

Alvarez, Walter. A Big History of Our Planet and Ourselves. New York: Norton, 2016.

Arenes, Alexandra, et al. Giving Depth to the Surface: An Exercise in the Gaia-Graphy of Critical Zones. Anthropocene Review. Online June, 2018.

Hermida, Margarida. Life on Earth is an Individual. Theory in Biosciences. Online February, 2016.

Jabr, Ferris. The Earth is just as Alive as You Are. New York Times. April 21, 2019.

Kleidon, Axel. How does the Earth System Generate and Maintain Thermodynamic Disequilibrium. Philosophical Transactions of the Royal Society A. 370/1012, 2012.

Langmuir, Charles and Wally Broecker. The Story of Earth from the Big Bang to Humankind. Princeton: Princeton University Press, 2012.

Lenton, Timothy, et al. Selection for Gaia across Multiple Scales. Trends in Ecology and Evolution. Online July, 2018.

Nicholson, Arwen, et al. Alternative Mechanisms for Gaia. Journal of Theoretical Biology. Online August, 2018.

Ruse, Michael. The Gaia Hypothesis. Chicago: University of Chicago Press, 2013.

C. A QUICKENING ENCEPHALIZATION AND SENSIBILITY

1. THE EVOLUTION OF BRAIN ANATOMY AND COGNIZANCE

Arbib, Michael. Towards a Computational Comparative Neuroprimatology. Physics of Life Reviews. 16/1, 2016

Briscoe, Steven and Clifton Ragsdale. Homology, Neocortex, and the Evolution of Developmental Mechanisms. Science. 362/190, 2018.

Burkhardt, Pawel and Simon Sprecher. Evolutionary Origin of Synapses and Neurons. BioEssays. Online September, 2017.

Collins, Christopher. Paleopoetics: The Evolution of the Preliterate Imagination. New York: Columbia University Press, 2013.

Hopfield, John. Neural Networks and Physical Systems with Emergent Collective Computational Abilities. Proceedings of the National Academy of Sciences. 79/2554, 2011.

Liebeskind, Benjamin, et al. Evolution of Animal Neural Systems Annual Review of Ecology, Evolution, and Systematics. 48/377, 2017.

Lyon, Pamela. The Cognitive Cell: Bacterial Behavior Reconsidered. Frontiers in Microbiology. Vol.6/Art.264, 2015.

Montgomery, John and David Bodznick. Evolution of the Cerebellar Sense. Oxford: Oxford University Press, 2016.

Murray, Elizabeth, et al. The Evolution of Memory Systems. New York: Oxford University Press, 2017.

Schmidt-Rhaesa, Andreas, et al, eds. Structure and Evolution of Invertebrate Nervous Systems. Oxford: Oxford University Press, 2016.

Striedter, Georg. Building Brains that can Evolve: Challenges and Prospects for Evo-Devo Neurobiology. Metode. Vol. 7/9, 2017.

van Duijn, Marc. Phylogenetic Origins of Biological Cognition. Interface Focus. 7/3, 2017.

2. ANIMAL INTELLIGENCE AND SOCIALITY

Carere, Claudio and Dario Maestripieri, eds. Animal Personalities: Behavior, Physiology, and Evolution. Chicago: University of Chicago Press, 2013.

De Waal, Frans. Are We Smart Enough to Know How Smart Animals Are? New York: Norton, 2016.

Japyassu, Hilton and Kevin Laland. Extended Spider Cognition. Animal Cognition. 20/3, 2017.

Marino, Lori and Debra Merskin. Intelligence, Complexity, and Individuality in Sheep. Animal Sentience. Vol. 4, 2019.

Plotnik, Jousha and Nicola Clayton. Convergent Cognitive Evolution across Animal Taxa. Eric Margolis and Stephen Laurence, eds. The Conceptual Mind. Cambridge: MIT Press, 2015.

Thornton, Alex, et al. Animal Minds: From Computation to Evolution. Philosophical Transactions of the Royal Society B. 367/2670, 2012.

Vonk, Jennifer and Todd Shackelford, eds. Encyclopedia of Animal Cognition and Behavior. International: Springer, 2019.

3. AN EMERGENT BICAMERAL BRAIN

Andics, Attila, et al. Neural Mechanisms for Lexical Processing in Dogs. Science. 353/1030, 2016.

Corballis, Michael and Isabelle Haberling. The Many Sides of Hemispheric Asymmetry. Journal of the International Neuropsychological Society. 23/9-10, 2017.

Frasnelli, Elisa, et al. Left-Right Asymmetries of Behaviour and Nervous System in Invertebrates. Neuroscience & Biobehavioral Reviews. 36/4, 2013.

Gunturkun, Onur and Sebastian Ocklenburg. Ontogenesis of Lateralization. Neuron. 94/2, 2017.

Levin, Michael, et al. Introduction to Provocative Questions in Left-Right Asymmetry. Philosophical Transactions of the Royal Society B. Vol. 371/Iss. 1710, 2016.

Rogers, Lesley and Giorgio Vallortigara, eds. Lateralized Brain Functions: Methods in Human and Non-Human Species. Switzerland: Springer, 2017.

4. ORGANISMS EVOLVE RHYTHMIC PROTOLANGUAGE COMMUNICATION

Balari, Sergio and Guillermo Lorenzo. Computational Phenotypes: Towards an Evolutionary Developmental Biolinguistics. Oxford: Oxford University Press, 2013.

Bichakjian, Bernard. Language Evolution: How Language was Built and Made to Evolve. Languages Sciences. Online March, 2017.

Everaert, Martin and Johan Bolhuis. The Biology of Language. Neuroscience & Biobehavioral Reviews. 81/B, 2017.

Fitch, W. Tecumseh. Special Issue on the Biology and Evolution of Language. Psychonomic Bulletin & Review. 24/1, 2017.

Hoeschele, Marisa. Preface to the Special Section on Animal Music Perception. Comparative Cognition and Behavior. Volume 12, 2017.

Kenneally, Christine. Talking through Time: The Role of Knowledge. Scientific American. September, 2018.

Massip-Bonet, Angels, et al, eds. Complexity Applications in Language and Communication Sciences. International: Springer, 2019.

Steels, Luc and Eors Szathmary. The Evolutionary Dynamics of Language. BioSystems. Online November, 2017.

D. THE ASCENT OF GENETIC INFORMATION: DNA/AND

Cobb, Matthew. Life’s Greatest Secret: The Race to Crack the Genetic Code. New York: Basic Books, 2015.

Field, Dawn and Neil Davies. Biocode: The New Age of Genomics. New York: Oxford University Press, 2015.

Griffiths, Paul and Karola Stotz. Genetics and Philosophy: An Introduction. Cambridge: Cambridge University Press, 2013.

Koonin, Eugene and Artem Novozhilov. Origin and Evolution of the Universal Genetic Code. Annual Review of Genetics. 51/45, 2017.

McGillivray, Patrick, et al. Network Analysis as a Grand Unifier in Biomedical Data Science. Annual Review of Biomedical Data Science. Vol. 1, 2018.

Mukherjee, Siddhartha. The Gene: An Intimate History. New York: Scribner, 2016.
Portin, Petter and Adam Wilkins. The Evolving Definition of the Term “Gene.” Genetics. 205/4, 2017.

Sweatt, David. The Emerging Field of Neuroepigenetics. Neuron. 80/3, 2013.
Watson, James, et al. DNA: The Story of the Genetic Revolution. New York: Knopf, 2017.

Zimmer, Carl. She Has Her Mother’s Laugh: The Powers, Perversions, and Potential of Heredity. New York: Dutton, 2018.

1. PALEOGENOMICS, GAIAGENOMICS, COSMOGENOMICS: NATURAL ANCESTRY

Benitez-Burraco, Antonio and Dan Dediu. Ancient DNA and Language. Journal of Language Evolution. 3/1, 2018.

Ermini, Luca, et al. Major Transitions in Human Evolution Revisited: A Tribute to Ancient DNA. Journal of Human Evolution. Volume 79, 2015.

Harris, Eugene. Ancestors in Our Genome: The New Science of Human Evolution. Oxford: Oxford University Press, 2014.

Llamas, Bastien, et al. Human Evolution: A Tale from Ancient Genomes. Philosophical Transactions of the Royal Society B. Vol.372/Iss.1713, 2016.

Paabo, Svante. Neanderthal Man: In Search of Lost Genomes. New York: Basic Books, 2011.

Reich, David. Ancient DNA and the New Science of the Human Past. New York: Pantheon, 2018.

Skoglund, Pontus and Iain Mathieson. Ancient Human Genomics: The First Decade. Annual Review of Genomics and Human Genetics. Vol. 19, 2018.

2. THE DEEP AFFINITY OF GENOMES AND LANGUAGES

Bolshoy, Alexander, et al. Genome Clustering: From Linguistic Models to Classification of Genetic Texts. Berlin: Springer, 2010.

Cartwright, Julyan, et al. DNA as Information. Philosophical Transactions of the Royal Society A. Vol.374/Iss.2063, 2016.

Faltynek, Dan, et al. On the Analogy between the Genetic Code and Natural Language by Sequence Analysis. Biosemiotics. Online April, 2019.

Igamberdiev, Abir and Nikita Shklovskiy-Kordi. Computational Power and Generative Capacity of Genetic Systems. BioSystems. 142-143/1, 2016.

List, Johann-Mattis, et al. Networks of Lexical Borrowing and Lateral Gene Transfer in Language and Genome Evolution. BioEssays. Online December, 2013.

Muskhelishvili, Georgi. DNA Information: Laws of Perception. Berlin: SpringerBriefs in Biology, 2015.

Searls, David. A Primer in Macromolecular Linguistics. Biopolymers. 99/3, 2013.

Zolyan, Suren and Renad Zhdanov. Genome as (hyper)Text: From Metaphor to Theory. Semiotica. 225/1, 2018.

3. GENOME WIDE COMPLEX NETWORK SYSTEMS

Angelin-Bonnet, Olivia, et al. Gene Regulatory Networks. arXiv:1805.01098.

Cortini, Ruggero, et al. The Physics of Epigenetics. arXiv:1509.04145.

Cowen, Lenore, et al. Network Propagation: A Universal Amplifier of Genetic Associations. Nature Reviews Genetics. 18/9, 2017.

Daniels, Bryan, et al. Logic and Connectivity Jointly Determine Criticality in Biological Gene Regulatory Networks. arXiv:1805.01447.

Grimbs, Anne, et al. A System-Wide Network Reconstruction of Gene Regulation and Metabolism in Escherichia coli. arXiv:1803.05429.

Misteli, Tom. Self-Organization in the Genome. Proceedings of the National Academy of Sciences. 106/6885, 2009.

Szedlak, Anthony, et al. Evolutionary and Topological Properties of Genes and Community Structures in Human Gene Regulatory Networks. PLoS Computational Biology. Online June, 2016.

E. AN ENHANCED AUTONOMOUS INDIVIDUALITY

Agren, Arvid. Evolutionary Transitions in Individuality. Trends in Ecology and Evolution. Online November, 2013.

Bouchard, Frederic and Philippe Huneman, eds. From Groups to Individuals: Evolution and Emerging Individuality. Cambridge: MIT Press, 2013.

Clarke, Ellen. A Levels-of-Selection Approach to Evolutionary Individuality. Biology & Philosophy. Online October, 2016.

Ferner, Adam and Thomas Pradeu. Ontologies of Living Beings. Philosophy, Theory, and Practice in Biology. Volume 9, 2017.

Hanschen, Erik, et al. Individuality and the Major Evolutionary Transitions. Gissis, Snait, et al, eds. Landscapes of Collectivity in the Life Sciences. Cambridge: MIT Press, 2018.

Lidgard, Scott and Lynn Nyhart, eds. Biological Individuality. Chicago: University of Chicago Press, 2017.

Moreno, Alvaro and Matteo Mossio. Biological Autonomy: A Philosophical and Theoretical Enquiry. Berlin: Springer, 2015

Radzvilavicius, Arunas and Neil Blackstone. The Evolution of Individuality Revisted. Biological Reviews. Online March, 2018.

Rosslenbroich, Bernd. On the Origin of Autonomy. Heidelberg: Springer, 2014.

West, Stuart, et al. Major Evolutionary Transitions in Individuality. Proceedings of the National Academy of Sciences. 112/10112, 2015.

F. NEW PARALLELS OF PHYLOGENY AND ONTOGENY: UNIVERSAL GESTATION

Abzhanov, Arhat. Von Baer’s Law for the Ages. Trends in Genetics. 29/12, 2013.

Botha, Rudolf. Language Evolution: The Windows Approach. Cambridge: Cambridge University Press, 2016.

Kohsokabe, Takahiro and Kunihiko Kaneko. Evolution-Development Congruence in Pattern Formation Dynamics. Journal of Experimental Zoology B. 326/1, 2016.

Niklas, Karl and Ulrich Kutschera. From Goethe’s Plant Archetype via Haeckel’s Biogenetic Law to Plant Evo-Devo. Theory in Biosciences. Online October, 2016.

Ostachuk, Augustin. On Novelty, Heterochrony and Developmental Constraints in a Complex Morphological Theory of Recapitulation. Evolutionary Biology. 43/3, 2015.

Tomasello, Michael and Amrisha Vaish. Origins of Human Cooperation and Morality. Annual Review of Psychology. 64/231, 2013.

G. INTEGRAL HUMAN PERSONS

1. SYSTEMS PHYSIOLOGY AND PSYCHOLOGY: SOMATIC AND BEHAVIORAL DEVELOPMENT

Bartsch, Ronny, et al. Network Physiology: How Organ Systems Dynamically Interact. PLoS One. November 10, 2015.

Cangelosi, Angelo and Matthew Schlesinger. Developmental Robotics: From Babies to Robots. Cambridge: MIT Press, 2015.

Farris, Sarah. Evolution of Brain Elaboration Philosophical Transactions of the Royal Society B. Vol.370/Iss.1684, 2015.

Hartenstein, Volker and Angelika Stollewerk. The Evolution of Early Neurogenesis. Developmental Cell. 32/4, 2016.

Hollenstein, Tom. Twenty Years of Dynamic Systems Approaches to Development. Child Development Perspectives. 5/4, 2011.

Ivanov, Plamen, et al. Focus on the Emerging New Fields of Network Physiology and Network Medicine. New Journal of Physics. 18/100201, 2016.

Legerstee, Maria, et al. The Infant Mind: Origins of the Social Brain. New York: Guilford Press, 2012.

Liebeskind, Benjamin, et al. Complex Homology and the Evolution of Nervous Systems. Trends in Ecology and Evolution. Online December, 2015.

Rolls, Edmund. Cerebral Cortex: Principles of Operation. Oxford: Oxford University Press, 2016.

Van Den Heuvel, Martijn, et al. Comparative Connectomics. Trends in Cognitive Science. Online March, 2016.

2. SYSTEMS NEUROSCIENCE: MULTIPLEX NETWORKS AND CRITICAL FUNCTION

Ariswalla, Xerxes and Paul Verschure. The Global Dynamical Complexity of the Human Brain. Applied Network Science. Online December, 2016.

Ascoli, Giorgio. Trees of the Brain, Roots of the Mind. Cambridge: MIT Press, 2015.

Bassett, Danielle and Olaf Sporns. Network Neuroscience. Nature Neuroscience. 20/3, 2017.

Buzsaki, Gyorgy, et al. Evolutionary Preservation of Brain Rhythms. Neuron. 80/3, 2013.

Cocchi, Luca, et al. Criticality in the Brain. arXiv:1707.05952.

Fornito, Alex, et al. Bridging the Gap between Connectome and Transcriptome. Trends in Cognitive Sciences. 23/1, 2019.

Kelso, Scott, et al. Outline of a General Theory of Behavior and Brain Coordination. Neural Networks. 37/1, 2013.

Kirchhoff, Michael. Predictive Brains and Embodied, Enactive Cognition. Synthese. 195/6, 2018.

Majhi, Soumen, et al. Chimera States in Neuronal Networks. Physics of Life Reviews. September, 2018.

Seung, Sebastian. Connectome: How the Brain’s Wiring Makes us Who We Are. Boston: Houghton Mifflin Harcourt, 2012.

Vazquez-Rodriguez, Bertha, et al. Stochastic Resonance at Criticality in a Network Model of the Human Cortex. Nature Scientific Reports. 7/13020, 2017.

3. A COMPLEMENTARY BRAIN AND THOUGHT PROCESS

Bassett, Danielle, et al. Task-Based Core-Periphery Organization of Human Brain Dynamics. PLoS Computational Biology. 9/9, 2013.

Chai, Lucy, et al. Functional Dynamics of the Language System. Cerebral Cortex. 26/11, 2016.

Crespi, Bernard, et al. Imagination in Human Social Cognition, Autism, and Psychotic-Affective Conditions. Cognition. 150/181, 2016.

De Haan, Edward, et al. Where are We Now with ‘What” and ‘How’? Cortex. 98/1, 2018.

Doron, Karl, et al. Dynamic Network Structure of Interhemispheric Coordination. Proceedings of the National Academy of Sciences. 109/18661, 2012.

Evans, Jonathan. Thinking Twice: Two Minds in One Brain. Oxford: Oxford University Press, 2010.

Friederici, Angela. Language in Our Brain: The Origins of a Uniquely Human Capacity.Cambridge: MIT Press, 2017.

Grossberg, Stephen. Towards Solving the Hard Problem of Consciousness. Neural Networks. 87/38, 2017.

Hickok, Gregory and Steven Small, eds. Neurobiology of Language. Cambridge, MA: Academic Press, 2015.

McGilchrist, Iain. The Master and His Emissary. New Haven: Yale University Press, 2019.

McHugh, Tara and Lori Buchanan. Pun Processing from a Psycholinguistic Perspective. Laterality: Asymmetries of Body, Brain and Cognition. 21/4-6, 2016.

O’Reilly, Randall, et al. Deep Predictive Learning: A Comprehensive Model of Three Visual Streams. arXiv:1709.04654.

Rowson, Jonathan and Iain McGilchrist. Divided Brain, Divided World. iainmcgilchrist.com.

4. CONSCIOUS INTEGRATED INFORMATION KNOWLEDGE

Dehaene, Stanislas. Consciousness and the Brain: Deciphering How the Brain Codes Our Thoughts. New York: Viking, 2014.

Esteban, Francisco, et al. Informational Structures: A Dynamical System Approach for Integrated Information. PLoS Computational Biology. September, 2018.

Feinberg, Todd and Jon Mallatt. The Evolutionary and Genetic Origins of Consciousness in the Cambrian Period Over 500 Million Years Ago. Frontiers in Psychology. 4/667, 2013.

Ginsburg, Simona and Eva Jablonka. The Evolution of the Sensitive Soul: Learning and the Origins of Consciousness. Cambridge: MIT Press, 2019.

Mateos, D. M., et al. Consciousness as a Global Property of Brain Dynamic Activity. arXiv:1710.08384.

Toker, Daniel and Friedrich Sommer. Information Integration in Large Brain Networks. PLoS Computational Biology. February, 2019.

Tononi, Giulio. Consciousness as Integrated Information. Biological Bulletin. 215/3, 2008.

Tononi, Giulio and Christof Koch. Consciousness: Here, There but Not Everywhere. arXiv:1405.7089.

5. GENDER COMPLEMENTS: A WOMAN'S WISDOME

Adenzato, Mauro, et al. Gender Differences in Cognitive Theory of Mind. Nature Scientific Reports. 7/41219, 2017.

Cahill, Larry. An Issue Whose Time Has Come. Journal of Neuroscience Research. 95/1-2, 2017.

Cochran, Tracy, ed. The Divine Feminine. Parabola: The Search for Meaning. 41/1, Spring, 2016.

Feminist, Alternatives. My Dream is to be Bold: Our Work to End Patriarchy. Cape Town, RSA: Pambazuka Press, 2011.

Goettner-Abendroth, Heide, ed. Societies of Peace: Matriarchies Past, Present and Future. Toronto: Inanna Publications, 2009.

Gur, Ruben and Raquel Gur. Complementarity of Sex Differences in Brain and Behavior. Journal of Neuroscience Research. 95/1-2, 2017.

MacGregor, Sherilyn, ed. Routledge Handbook of Gender and Environment. London: Routledge, 2017.

Orrell, David. Truth or Beauty: Science and the Quest for Order. New Haven: Yale University Press, 2012.

Tadic, Bosiljka, et al. Functional Geometry of Human Connectome and Robustness of Gender Differences. arXiv:1904.03399.

Wang, Robin. Yinyang: The Way of Heaven and Earth in Chinese Thought and Culture. Cambridge: Cambridge University Press, 2012.

6. A SYMBIOTIC PERSONAL SELF

Cosmides, Leda and John Tooby. Evolutionary Psychology: New Perspectives on Cognition and Motivation. Annual Review of Psychology. 64/201, 2013.

Damasio, Antonio. Self Comes to Mind: Constructing the Conscious Brain. New York: Pantheon Books, 2010.

Feinberg, Todd. From Axons to Identity: Neurological Explorations of the Nature of the Self. New York: Norton, 2009.

Gergen, Kenneth. Relational Being: Beyond Self and Community. Oxford: Oxford University Press, 2009.

Harter, Susan. The Construction of the Self. New York: Guilford Press, 2012.

Markus, Hazel and Shinobu Kitayama. Cultures and Selves: A Cycle of Mutual Constitution. Perspectives on Psychological Science. 5/4, 2010.

Prinz, Wolfgang. Open Minds: The Social Making of Agency and Intentionality. Cambridge: MIT Press,, 2012.

Thagard, Paul. The Self as a System of Multilevel Interacting Mechanisms. Philosophical Psychology. 27/2, 2014.

7. ARCHETYPAL PSYCHOLOGY

Berzonsky, Carol and Susanne Moser. Becoming Homo Sapiens Sapiens: Mapping the Psycho-Cultural Transformation in the Anthropocene. Anthropocene. Online November, 2017

Cambray, Joseph and Leslie Sawin, eds. Research in Analytical Psychology: Applications from Scientific, Historical, and Cross-Cultural Research. London: Routledge, 2018.

Drob, Sanford. Kabbalistic Visions: C. G. Jung and Jewish Mysticism. New Orleans: Spring Journal Books, 2010.

Horowitz, Mardi. Identity and the New Psychoanalytic Explorations of Self-Organization. London: Routledge, 2014.

Nicolaus, Georg. C. G. Jung and Nikolai Berdyaev: Individuation and the Person. London: Routledge, 2011.

Skar, Patricia. Chaos and Self-Organization: Emergent Patterns at Critical Life Transitions. Journal of Analytical Psychology. 49/2, 2004.

H. THE PHENOMENON OF HUMANKINDERr

1. A CULTURAL CODE: SYSTEMS LINGUISTICS

Atkinson, Quentin. The Descent of Words. Proceedings of the National Academy of Sciences. 110/4159, 2013.

Beckner, Clay, et al. Language as a Complex Adaptive System. Language Learning. 59/Supp. 1, 2009.

Binder, Phillippe and Kenny Smith, eds. The Language Phenomenon. Berlin: Springer, 2013.

Blythe, Richard. Symmetry and Universality in Language Change. arXiv:1508.05297.

Hurford, James. The Origins of Grammar: Language in the Light of Evolution. Oxford: Oxford University Press, 2012.

Kirby, Simon. Culture and Biology in the Origins of Linguistic Structure. Psychonomic Bulletin & Review. 24/1, 2017.

Loreto, Vittorio, et al. Statistical Physics of Language Dynamics. Journal of Statistical Mechanics. 4/P04006, 2011.

MacWhinney, Brian and William O’Grady, eds. The Handbook of Language Emergence. New York: Wiley, 2015.

Progovac, Ljiljana. Evolutionary Syntax. Oxford: Oxford University Press, 2015.

Steels, Luc. Agent-Based Models for the Emergence and Evolution of Grammar. Philosophical Transactions of the Royal Society B. 371/20150447, 2016.

Youn, Hyejin, et al. On the Universal Structure of Human Lexical Semantics. Proceedings of the National Academy of Sciences. 113/1766, 2016.

2. COMPLEX LOCAL AND GLOBAL SOCIETIES

Amazeen, Poleminia. From Physics to Social Interactions: Scientific Unifications via Dynamics. Cognitive Systems Research. 52/640, 2018.

Blanton, Richard and Lane Fargher. How Humans Cooperate. Boulder: University of Colorado Press, 2016.

Dean, Lewis, et al. Human Cumulative Culture. Biological Reviews. 89/2, 2014.

Hall, Gavin and William Bialek. The Statistical Mechanics of Twitter. arXiv:1812.07029.

Kesebir, Selin. The Superorganism Account of Human Sociality. Personality and Social Psychology Review. 16/3, 2012.

Mesoudi, Alex. Prospects for a Science of Cultural Evolution. Proceedings of the National Academy of Sciences. 114/7853, 2017.

Muthukrishna, Michael, et al. The Cultural Brain Hypothesis. PLoS Computational Biology. November, 2018.

Perc, Matjaz, et al. Statistical Physics of Human Cooperation. Physics Reports. Online May, 2017.

Schweitzer, Frank. Sociophysics. Physics Today. February, 2018.

Thurner, Stefan. Virtual Social Science. arXiv:1811.08156.

Whiten, Andrew, et al. The Extension of Biology Through Culture. Proceedings of the National Academy of Sciences. 114/7775, 2017.

3. A PLANETARY PHYSIOSPHERE: ANATOMICS, ECONOMICS, URBANOMICS

Baccini, Peter and Paul Brunner. Metabolism of the Anthroposphere. Cambridge: MIT Press, 2012.

Bardoscia, Marco, et al. Statistical Mechanics of Complex Economies. Journal of Statistical Mechanics. Online April, 2017.

Batty, Michael. Inventing Future Cities. Cambridge: MIT Press, 2018.

Cogdell, Christina. Toward a Living Architecture?: Complexism and Biology in Generative Design. Minneapolis: University of Minnesota Press, 2019.

Helbing, Dirk, et al. Saving Human Lives: What Complexity Science and Information Systems can Contribute. Journal of Statistical Physics. Online June, 2014.

Netto, Vincius, et al. Cities, from Information to Interaction. Entropy. 20/11, 2018.

Schinckus, Christophe. Introduction to Econophysics. Contemporary Physics. 54/1, 2013.

White, Roger, et al. Modeling Cities and Regions as Complex Systems. Cambridge: MIT Press, 2015.

4. THE COMPLEMENTARITY OF CIVILIZATIONS

Bao, Yan, et al. Complementarity as Generative Principle. Frontiers in Psychology. Online May, 2017.

De Oliveira, Stephanie and Richard Nisbett. Beyond East and West: Cognitive Style in Latin America. Journal of Cross-Cultural Psychology. 48/10, 2017.

Hwang, Kwang-kuo. Foundations of Chinese Psychology: Confucian Social Relations. Dordrecht: Springer, 2012.

Kessler, Klaus, et al. A Cross-Culture, Cross-Gender Comparison of Perspective Taking Mechanisms. Proceedings of the Royal Society B. 281/20140388, 2014.

Nisbett, Richard. Mindware: Tools for Smart Thinking. New York: Farrar, Strauss, Giroux, 2015.

Poppel, Ernst. East of West, West of East: A Matter of Global and Local Identity. Cognitive Processing. 19/S.1, 2018.

Targowski, Andrew. The Limits of Civilization. Hauppauge, NY: Nova Scientific,, 2016

5. BICAMERAL WORLD RELIGIONS

Biernacki, Loriliai and Philip Clayton, eds. Panentheism Across the World's Traditions. Oxford: Oxford University Press, 2013.

Choi, Kwang Sun. Ecozoic Spirituality. New York: Peter Lang, 2015.

Cohen, Adam, et al. Religion and Culture: Individualism and Collectivism in the East and West. Journal of Cross-Cultural Psychology. Online August, 2016.

Jaeshik, Shin. Mapping One World: Religion and Science from an East Asian Perspective. Zygon. 51/1, 2016.

Knysh, Alexander. Sufism: A New History of Islamic Mysticism. Princeton: Princeton University Press, 2017.

McGilchrist, Iain. God, Metaphor, and the Language of the Hemispheres. Chilton, Paul and Monika Kopytowska, eds. Religion, Language, and the Human Mind. Oxford: Oxford University Press, 2018.

Shanta, Bhakti Niskama. Life and Consciousness: The Vedantic View. Communicative & Integrative Biology. 8/5, 2015.

6. RELIGION AND SCIENCE

Conradie, Ernst, ed. Creation and Salvation. Berlin: LIT Verlag, 2012.

Conway Morris, Simon. Darwin’s Compass: How Evolution Discovers the Song of Creation. Manning, Russell Re and Michael Bryne, eds. Science and Religion in the Twenty-First Century. London: SCM Press, 2013.

Gilbert, Scott. Wonder and the Necessary Alliances of Science and Religion. Euresis Journal. Volume 4, 2013.

Pruett, Dave. Reason and Wonder: A Copernican Revolution in Science and Spirit. New York: Praeger, 2012.

Rutman, Joel Yehudah. Why Evolution Matters: A Jewish Approach. London: Valentine Mitchell, 2014.

Sacks, Jonathan. The Great Partnership: Science, Religion, and the Search for Meaning. New York: Schocken Books, 2012.

Sloan, Phillip, et al, eds. Darwin in the Twenty First Century: Nature, Humanity, and God. Norte Dame, IN: University of Notre Dame Press, 2015.

7. SYSTEMS HISTORY: PERSONAL AND PLANETARY INDIVIDUATION

Bohan, Elise, et al, eds. Big History. New York: DK Publishing, 2016.

Boyer, Pascal. Minds Make Societies: How Cognition Explains the World Humans Create. New Haven: Yale University Press, 2018.

Christian, David. Origin Story: A Big History of Everything. New York: Little Brown, 2018.

Clemens, Walter. Complexity Science and World Affairs. Albany: SUNY Press, 2014.

Hornborg, Alf and Carole Crumley, eds. The World System and the Earth System. Walnut Creek, CA: Left Coast Press, 2007.

Shryock, Andrew and Daniel Lord Smail, eds. Deep History: The Architecture of Past and Present. Berkeley: University of California Press, 2011.

Spier, Fred. Big History and the Future of Humanity. Malden, MA: Wiley-Blackwell, 2015.

Turchin, Peter. Secular Cycles. Princeton: Princeton University Press, 2009.

8. AN EMERGENT EVOLUTIONARY TRANSITION TO A PERSONSPHERE PROGENY

Andersson, Claes and Petter Tornberg. Toward a Macroevolutionary Theory of Human Evolution: The Social Protocell. Biological Theory. Online December, 2018.

Bourke, Andrew F. G. Principles of Social Evolution. Oxford: Oxford University Press, 2011.

Calcott, Brett and Kim Sterelny, ed. The Major Transitions in Evolution Revisited. Cambridge: MIT Press, 2011.

Clarke, Ellen. Origins of Evolutionary Transitions. Journal of Biosciences. 39.2, 2017.

Foley, Robert, et al. Major Transitions in Human Evolution. Philosophical Transactions of the Royal Society B. 371/1698, 2016.

Furukawa, Hikaru and Sara Imari Walker. Major Transitions in Planetary Evolution. Ikegami, Takashi, et al, eds. ALIFE 2018 Conference Proceedings. Cambridge: MIT Press, 2018.

Henrich, Joseph. The Secret of Our Success. Princeton: Princeton University Press, 2015.

Hoffecker, John. Modern Humans: Their African Origin and Global Dispersal. New York: Columbia University Press, 2017.

Kesebir, Selin. The Superorganism Account of Human Sociality. Personality and Social Psychology Review. 16/3, 2012.

Rosslenbroich, Bernd. On the Origin of Autonomy. Heidelberg: Springer, 2014.

VII. PEDIA SAPIENS: A GENESIS FUTURE ON EARTH AND IN THE HEAVENS

A. THE OLD EARTH: OUR CRITICAL LIFE SUPPORT CONDITION

Brooks, Rosa. How Everything Became War and the Military Became Everything. New York: Simon & Schuster, 2016.

Caldicott, Helen, ed. Sleepwalking to Armageddon: The Threat of Nuclear Annihilation. New York: New Press, 2017.

Diamond, Jared. Upheaval: Turning Points for Nations in Crisis. New York: Little, Brown, 2019.

Hansen, James, et al. Ice Melt, Sea Level Rise and Superstorms Atmospheric Chemistry and Physics. 16/3761, 2016.

Mora, Camilo, et al. Broad Threat to Humanity from Cumulative Climate Hazards. Nature Climate Change. November, 2018.

Schneider, Tapio, et al. Possible Climate Transitions from Breakup of Stratocumulus Decks under Greenhouse Warming. Nature Geoscience. Online February, 2019.

Vallacher, Robin, et al. Attracted to Conflict: Dynamic Foundations of Destructive Social Relations. Berlin: Springer, 2013.

Wallace-Wells, David. The Uninhabitable Earth: Life After Warming. New York: Tim Duggan/Crown, 2019.

1. AN ANTHROPOCENE MOMENT: KINDER OR CINDER

Donges, Jonathan, et al. Reconnecting Human Dynamics to Earth System Dynamics. Anthropocene Review. Online August, 2017.

Gaffney, Owen and Will Steffen. The Anthropocene Equation. Anthropocene Review. Online February, 2017.

Nicholson, Simon and Sikina Jinnah, eds. New Earth Politics: Essays from the Anthropocene. Cambridge: MIT Press, 2016.

Oppermann, Serpil and Serenella Iovino, eds. Environmental Humanities: Voices from the Anthropocene. London: Rowman & Littlefield, 2016.

Steffen, Will, et al. Trajectories of the Earth System in the Anthropocene. Proceedings of the National Academy of Sciences. 115/8252, 2018.

2. GLOBAL CLIMATE CHANGE AS A COMPLEX DYNAMICAL SYSTEM

Boers, Niklas, et al. Complex Networks Reveal Global Pattern of Extreme Rainfall Teleconnections. Nature Climate Change. January 30, 2019.

Franzke, Christian and Terence O’Kane, eds. Nonlinear and Stochastic Climate Dynamics. Cambridge: Cambridge University Press, 2017.

Lovejoy, Shaun and Daniel Schertzer. The Weather and Climate: Emergent Laws and Multifractal Cascades. Cambridge: Cambridge University Press, 2013.

Palmer, Tim, et al. Stochastic Modelling and Energy-Efficient Computing for Weather and Climate. Philosophical Transactions of the Royal Society A. Vol.372/Iss. 2018, 2014.

Yalcin, G. Cigdem, et al. Extreme Event Statistics of Daily Rainfall: Dynamical Systems Approach. Journal of Physics A. 49/154001, 2016.

B. A NEW CREATION: AN EVOLUTION TO EVOLITIONARY SINGULAR EVENT

1. MIND OVER MATTER: A QUANTUM, ATOMIC, CHEMICAL MATERIALITY

Alberi, Kirstin, et al. The 2019 Materials by Design Roadmap. Journal of Physics D. 52/013001, 2019.

Carrasquilla, Juan and Roger Melko. Machine Learning Phases of Matter. Nature Physics. 13/5, 2018.

Cronin, Leroy, et al. Catalyst: The Metaphysics of Chemical Reactivity. Chem. 4/8, 2018.

Deane-Drummond, Celia, et al, eds. Technofutures, Nature and the Sacred. Surrey, UK: Ashgate, 2015.

Klishin, Andrei, et al. Statistical Physics of Design. New Journal of Physics. 20/103038, 2018.

Nosengo, Nicola. The Material Code. Nature. 533/23, 2016.

Van Anders, Greg, et al. Digital Alchemy for Materials Design. ACS Nano. 9/10, 2015.

Yeo, Jingjie, et al. Materials-by-Design: Computation, Synthesis, and Characterization from Atoms to Structures. Physica Scripta. 93/5, 2018.

2. SECOND GENESIS: LIFE BEGINS ANEW VIA OUR RESPECTFUL PROCREATIVITY

Bhasin, Devesh and Daniel McAdams. The Characterization of Biological Organization, Abstraction and Novelty in Biomimetic Design. Design. 2/4, 2018.

Cheng, Feng, et al. Directed Evolution 2.0. Chemical Communications. 51/9760, 2015.

Davies, Jamie. Real-World Synthetic Biology. Life. 9/1, 2019.

Feldman, Aaron and Floyd Romesberg. Expansion of the Genetic Alphabet. Accounts of Chemical Research. Online December, 2017.

Hagen, Kristin, et al, eds. Ambivalences of Creating Life: Societal and Philosophical Dimensions of Synthetic Biology. Dordrecht: Springer, 2016.

Karalkar, Nilesh and Steven Benner. Synthetic Darwinism and the Aperiodic Crystal Structure. Current Opinion in Chemical Biology. 46/188, 2018.

Sole, Ricard. The Major Synthetic Evolutionary Transitions. Philosophical Transactions of the Royal Society B 371/20160175, 2016.

3. POSITIVE PERSONAL ENHANCEMENT WITHIN COMMUNITY

Csikszentmihalyi, Mihaly and Isabella Selega Csikszentmihalyi, eds. A Life Worth Living. Oxford: Oxford University Press, 2006.

Lopez, Shane, et al, eds. Positive Psychology: The Scientific and Practical Explorations of Human Strengths. Thousand Oaks, CA: Sage Publications, 2015.

Pluess, Michael, ed. Genetics of Psychological Well-Being. Oxford: Oxford University Press, 2015.

Seligman, Martin. Flourish: A Visionary New Understanding of Happiness and Well-being. New York: Atria Books, 2012.

VanderWeele, Tyler. On the Promotion of Human Flourishing. Proceedings of the National Academy of Sciences. 114/8148, 2017.

4. Sustainable Ecovillages: me + We = US

Armstrong, Rachel. Vibrant Architecture: Matter as a CoDesigner of Living Structures. Online: De Gruyter Open, 2015.

Bohm, Steffen, et al. Ecocultures: Blueprints for Sustainable Communities. London: Routledge, 2014.

Downton, Paul. Ecopolis: Architecture and Cities for a Changing Climate. Dordrecht: Springer, 2009.

Jarvis, Helen. Saving Space, Sharing Time: Integrated Infrastructures of Daily Life in Cohousing. Environment and Planning A. 43/3, 2011.

Kammen, Daniel. Sustainable Communities. Scientific American. December, 2017.

Litfin, Karen. Ecovillages: Lessons for Sustainable Community. London: Polity Books, 2014.

Scott, Andrew and Eran Ben-Joseph. ReNew Town: Adaptive Urbanism and the Low Carbon Community. London: Routledge, 2011.

Wilson, David Sloan. This View of Life: Completing the Darwinian Revolution. New York: Pantheon, 2019.

5. AN ORGANIC, PARTICIPATORY DEMOCRACY

Abele, Andrea and Bogdan Wojciszke. Communal and Agentic Content: A Dual Perspective Model. Advances in Experimental Social Psychology. Volume 50, 2014.

Cornell, Drucilla and Nyoko Muvanqua, eds. uBuntu and the Law: African Ideals. New York: Fordham University Press, 2012.

Fiske, Susan. Political Cognition Helps Explain Social Class Divides. Cognition. 188/108, 2019.

Grossmann, Matt and David Hopkins. Asymmetric Politics: Ideological Republicans and Group Interest Democrats. New York: Oxford University, 2017.

Landemore, Helene. Democratic Reason: Politics, Collective Intelligence, and the Rule of the Many. Princeton: Princeton University Press, 2013.

Wiesner, Karoline, et al. Stability of Democracies: A Complex Systems Perspective. European Journal of Physics. 40/1, 2019.

6. A VIABLE GAIASPHERE: PLANETARY PATRIOTS

Alberti, Marina. Cities That Think like Planets. Seattle: University of Washington Press, 2016.

Battro, Antonio, et al, eds. Children and Sustainable Development. International: Springer, 2017.

Brown, Valerie and John Harris. The Human Capacity for Transformational Change: Harnessing the Collective Mind. London: Routledge, 2014.

Callicott, J. Baird. Thinking Like a Planet. New York: Oxford University Press, 2014.

Egmond, Klaas Van. Sustainable Civilization. London: Palgrave Macmillan, 2014.

Kelbessa, Workineh. African Environmental Ethics. Environmental Ethics. 37/4, 2016.

Lenton, Timothy and Bruno Latour. Gaia 2.0. Science. 361/1066, 2018.

Levin, Simon, et al. Social-Ecological Systems as Complex Adaptive Systems. Environment and Development Economics. 18/2, 2013.

Nelson, David, et al. Clinical Ecology: Transforming 21st Century Medicine with Planetary Health in Mind. Challenges. 10/1, 2019.

Som, Sanjoy. Common Identity as a Step to Civilization Longevity. Futures. Online August, 2018.

Yuxin, Jia and Jia Xuelai. The Anthropocosmic Perspective on Intercultural Communication: Learning to be Global Citizens. Intercultural Communication Studies. 25/1, 2016.

C. AN EARTHROPIC PRINCIPLE: NOVEL EVIDENCE ABOUT A SPECIAL BIOWORLD

Batygin, Konstantin and Greg Laughlin. Jupiter’s Decisive Role in the Inner Solar System’s Early Evolution. Proceedings of the National Academy of Sciences. 112/4214, 2015.

Chopra, Aditya and Charles Lineweaver. The Case for a Gaian Bottleneck: The Biology of Habitability. International Journal of Astrobiology. 16/1, 2016.

Cirkovic, Milan. The Great Silence: Science and Philosophy of Fermi’s Paradox. Oxford: Oxford University Press, 2018.

Frank, Adam, et al. Earth as a Hybrid Planet: The Anthropocene in an Evolutionary Astrobiological Context. Anthropocene. Online August, 2017.

Gribbin, John. Alone in the Milky Way. Scientific American. September, 2018.

Lingam, Manasvi and Abraham Loeb. Physical Constraints for the Evolution of Life on Exoplanets. arXiv:1810:02007.

Morbidelli, Alessandro, et al. Topical Collection on the Delivery of Water to Proto-Planets, Planets and Satellites. Space Science Reviews. 214/7, 2018.

Smith, Howard. Alone in the Universe. Zygon. 51/2, 2016.

Waltham, David. Lucky Planet: Why Earth is Exceptional. New York: Basic Books, 2014.

Webb, Stephen. If the Universe is Teeming with Aliens-- Where is Everybody? New York: Springer, 2015.

D. COSMOCENE DESTINY: THE GREENING OF THE GALAXY

Baum, Seth, et al. Long-Term Trajectories of Human Civilization. Foresight.Online January, 2019.

Dosovic, Vladimir, et al. Advanced Aspects of the Galactic Habitability. arXiv:1904.01062.

Dyson, Freeman. A Vision of a Green Universe. New York Review of Books. October 13, 2016.

Haussler, David. Odds for an Enlightened Rather than Barren Future. arXiv:1608.05776.

Kaku, Michio. The Future of Humanity. New York: Doubleday, 2018.

Salcido, Jaime, et al. What Does the Future of Our Universe Hold?. arXiv:1710.06861.

Zenil, Hector. Reprogramming Matter, Life, and Purpose. arXiv:1704.00725.